# HG changeset patch # User iuc # Date 1542727987 18000 # Node ID 33c2e424ad7d88ddfff9ec13ecd478e859684a60 # Parent 01c7c0d32674e40fcfa9047518bf763246968616 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 39701b6cbb7a45ec45f1545648b73a6b8ed3e184 diff -r 01c7c0d32674 -r 33c2e424ad7d mapBed.xml --- a/mapBed.xml Fri Aug 17 05:42:20 2018 -0400 +++ b/mapBed.xml Tue Nov 20 10:33:07 2018 -0500 @@ -1,4 +1,4 @@ - + apply a function to a column for each overlapping interval macros.xml @@ -7,17 +7,17 @@ "${output}" +bedtools map +-a '${inputA}' +-b '${inputB}' +$strand +@C_AND_O_ARGUMENT@ +-f $overlap +$reciprocal +$split +$header +@GENOME_FILE_MAPBED@ +> '${output}' ]]> @@ -29,7 +29,7 @@ help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" /> - +