diff macros.xml @ 64:f6c88d2e9ae5 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9

--- a/macros.xml	Thu Mar 02 08:50:31 2023 +0000
+++ b/macros.xml	Fri Feb 21 21:38:34 2025 +0000
@@ -10,7 +10,7 @@
             <xref type="bio.tools">bedtools</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.30.0</token>
+    <token name="@TOOL_VERSION@">2.31.1</token>
     <token name="@SAMTOOLS_VERSION@">1.9</token>
     <token name="@STD_BEDTOOLS_INPUTS@">bed,bedgraph,gff,vcf,encodepeak</token>
     <token name="@STD_BEDTOOLS_INPUT_LABEL@">BED/bedGraph/GFF/VCF/EncodePeak</token>
@@ -51,16 +51,7 @@
         </param>
     </xml>
     <xml name="seed">
-        <conditional name="seed">
-            <param name="seed_choose" type="select" label="Choose Seed?">
-                <option value="False" selected="true">Random Shuffling</option>
-                <option value="True">Choose fixed seed</option>
-            </param>
-            <when value="True">
-                <param argument="-seed" type="integer" value="12345" label="Enter Seed" />
-            </when>
-            <when value="False" />
-        </conditional>
+        <param argument="-seed" type="integer" value="" min="0" optional="true" label="Seed" help="For reproducible 'randomness'"/>
     </xml>
     <xml name="split">
         <param argument="-split" type="boolean" truevalue="-split" falsevalue="" checked="false"
@@ -215,13 +206,19 @@
         <option value="median">Median - numeric only</option>
         <option value="mode">Mode - numeric only</option>
         <option value="antimode">Antimode - numeric only</option>
+        <option value="stdev">Standard deviation - numeric only</option>
+        <option value="sstdev">Sample standard deviation - numeric only</option>
         <option value="collapse">collapse (i.e., print a comma separated list) - numeric or text</option>
     </xml>
     <xml name="additional_math_options">
         <option value="count">Count - numeric or text</option>
         <option value="count_disctinct">Count Distinct - numeric or text</option>
         <option value="distinct">distinct (i.e., print a comma separated list) - numeric or text</option>
-        <option value="concat">concat (i.e., print a comma separated list) - numeric or text</option>
+        <option value="distinct_sort_num">distinct sorted numerially (i.e., print a comma separated list) - numeric</option>
+        <option value="distinct_sort_num_desc">distinct sorted numerially descending (i.e., print a comma separated list) - numeric</option>
+        <option value="distinct_only">delimited list of only unique values - numeric or text</option>
+        <option value="first">just the first value in the column - numeric or text</option>
+        <option value="last">just the last value in the column - numeric or text</option>
     </xml>
     <xml name="sorted">
         <!-- -sorted -g  -->