Mercurial > repos > iuc > bedtools

diff bedpeToBam.xml @ 64:f6c88d2e9ae5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9
author iuc
date Fri, 21 Feb 2025 21:38:34 +0000
parents 9f6bd4c9479f
children
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--- a/bedpeToBam.xml	Thu Mar 02 08:50:31 2023 +0000
+++ b/bedpeToBam.xml	Fri Feb 21 21:38:34 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>converter</description>
     <macros>
         <import>macros.xml</import>
@@ -6,7 +6,7 @@
     <expand macro="bio_tools" />
     <!-- bedtobam broken in 2.29.0 <expand macro="requirements" /> -->
     <requirements>
-        <requirement type="package" version="2.27.1">bedtools</requirement>
+        <requirement type="package" version="2.31.1">bedtools</requirement>
     </requirements>
     <expand macro="stdio" />
     <command><![CDATA[
@@ -28,8 +28,8 @@
     <tests>
         <test>
             <param name="input" value="bedpeToBamBed1.bed" ftype="bed" />
-            <param name="genome_file_opts_selector" value="hist" />
-            <param name="genome" value="mm9.len"/>
+            <param name="genome_file_opts|genome_file_opts_selector" value="hist" />
+            <param name="genome_file_opts|genome" value="mm9.len"/>
             <output name="output" file="bedpeToBam_result1.bam" lines_diff="72" ftype="unsorted.bam" />
         </test>
     </tests>