diff complementBed.xml @ 64:f6c88d2e9ae5 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 73ebd55430874a3c1483b6dd6cce0482175482f9

--- a/complementBed.xml	Thu Mar 02 08:50:31 2023 +0000
+++ b/complementBed.xml	Fri Feb 21 21:38:34 2025 +0000
@@ -1,11 +1,11 @@
-<tool id="bedtools_complementbed" name="bedtools ComplementBed" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
+<tool id="bedtools_complementbed" name="bedtools ComplementBed" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>Extract intervals not represented by an interval file</description>
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro="bio_tools" />
-    <expand macro="requirements" />
-    <expand macro="stdio" />
+    <expand macro="bio_tools"/>
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
     <command><![CDATA[
 complementBed
 -i '$input'
@@ -14,17 +14,17 @@
     ]]></command>
     <inputs>
         <param name="input" argument="-i" type="data" format="@STD_BEDTOOLS_INPUTS@" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
-        <expand macro="input_conditional_genome_file" />
+        <expand macro="input_conditional_genome_file"/>
     </inputs>
     <outputs>
         <data name="output" format_source="input" metadata_source="input" label="Complement of ${input.name}"/>
     </outputs>
     <tests>
         <test>
-            <param name="input" value="a.bed" ftype="bed" />
-            <param name="genome_file_opts_selector" value="hist" />
-            <param name="genome" value="mm9_chr1.len" ftype="tabular" />
-            <output name="output" file="complementBed_result1.bed" ftype="bed" />
+            <param name="input" value="a.bed" ftype="bed"/>
+            <param name="genome_file_opts|genome_file_opts_selector" value="hist"/>
+            <param name="genome_file_opts|genome" value="mm9_chr1.len" ftype="tabular"/>
+            <output name="output" file="complementBed_result1.bed" ftype="bed"/>
         </test>
     </tests>
     <help><![CDATA[
@@ -36,5 +36,5 @@
 
 @REFERENCES@
     ]]></help>
-    <expand macro="citations" />
+    <expand macro="citations"/>
 </tool>