Mercurial > repos > iuc > bedtools

diff windowBed.xml @ 26:c0fbce5dc84a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:20 -0400
parents a2d4c30ba2f9
children f0aca67fdb71
line wrap: on
line diff
--- a/windowBed.xml	Wed Sep 14 17:29:56 2016 -0400
+++ b/windowBed.xml	Mon Oct 17 10:13:20 2016 -0400
@@ -9,11 +9,11 @@
 <![CDATA[
         bedtools window
         #if $inputA.ext == "bam":
-            -abam $inputA
+            -abam '$inputA'
         #else:
-            -a $inputA
+            -a '$inputA'
         #end if
-        -b $inputB
+        -b '$inputB'
         $bed
         $strandB
         #if $addition.addition_select == 'window':
@@ -26,7 +26,7 @@
         $number
         $nooverlaps
         $header
-        > $output
+        > '$output'
 ]]>
     </command>
     <inputs>