Mercurial > repos > iuc > bedtools
diff mergeBed.xml @ 26:c0fbce5dc84a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
| author | iuc |
|---|---|
| date | Mon, 17 Oct 2016 10:13:20 -0400 |
| parents | a2d4c30ba2f9 |
| children | d279800f4ff9 |
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--- a/mergeBed.xml Wed Sep 14 17:29:56 2016 -0400 +++ b/mergeBed.xml Mon Oct 17 10:13:20 2016 -0400 @@ -1,4 +1,4 @@ -<tool id="bedtools_mergebed" name="MergeBED" version="@WRAPPER_VERSION@.1"> +<tool id="bedtools_mergebed" name="MergeBED" version="@WRAPPER_VERSION@.0"> <description>combine overlapping/nearby intervals into a single interval</description> <macros> <import>macros.xml</import> @@ -120,12 +120,12 @@ ========================================================================== -*-d* Controlling how close two features must be in order to merge +*-d* Controlling how close two features must be in order to merge ========================================================================== -By default, only overlapping or book-ended features are combined into a new -feature. However, one can force ``merge`` to combine more distant features -with the ``-d`` option. For example, were one to set ``-d`` to 1000, any -features that overlap or are within 1000 base pairs of one another will be +By default, only overlapping or book-ended features are combined into a new +feature. However, one can force ``merge`` to combine more distant features +with the ``-d`` option. For example, were one to set ``-d`` to 1000, any +features that overlap or are within 1000 base pairs of one another will be combined. :: @@ -133,7 +133,7 @@ $ cat A.bed chr1 100 200 chr1 501 1000 - + $ bedtools merge -i A.bed chr1 100 200 chr1 501 1000