diff randomBed.xml @ 0:4fb5ea02b441 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/randomBed.xml	Tue Jul 15 14:42:23 2014 -0400
@@ -0,0 +1,34 @@
+<tool id="bedtools_randombed" name="RandomBed" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <command>
+        bedtools random
+        -g $genome
+        -l $length
+        -n $intervals
+        #if $seed.choose:
+        -seed $seed.seed
+        #end if
+    </command>
+    <inputs>
+        <expand macro="genome" />
+        <param name="length" type="integer" value="100" label="The length of the intervals to generate." />
+        <param name="intervals" type="integer" value="1000000" label="The number of intervals to generate." />
+        <expand macro="seed" />
+    </inputs>
+    <outputs>
+        <data format="bed" name="output" />
+    </outputs>
+    <help>
+
+**What it does**
+
+bedtools random will generate a random set of intervals in BED6 format. One can specify both the number (-n) and the size (-l) of the intervals that should be generated.
+
+@REFERENCES@
+    </help>
+</tool>