diff Bed12ToBed6.xml @ 0:4fb5ea02b441 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Bed12ToBed6.xml	Tue Jul 15 14:42:23 2014 -0400
@@ -0,0 +1,27 @@
+<tool id="bedtools_bed12tobed6" name="Convert from BED12 to BED6" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <command>
+        bed12ToBed16
+        -i '$input'
+        &gt; '$output'
+    </command>
+    <inputs>
+        <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/>
+    </inputs>
+    <outputs>
+        <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/>
+    </outputs>
+    <help>
+
+**What it does**
+
+bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon).
+
+@REFERENCES@
+    </help>
+</tool>