diff tool_dependencies.xml @ 4:315929597efb draft

Uploaded

--- a/tool_dependencies.xml	Sat Jan 03 16:23:23 2015 -0500
+++ b/tool_dependencies.xml	Wed Jan 07 12:45:05 2015 -0500
@@ -1,22 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="bedtools" version="2.22">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://github.com/arq5x/bedtools2/releases/download/v2.22.1/bedtools-2.22.1.tar.gz</action>
-                <action type="shell_command">make</action>
-                <action type="move_directory_files">
-                    <source_directory>bin</source_directory>
-                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>BEDTools is a collection of utilities for comparing, summarizing, and intersecting genomic features in BED, GTF/GFF, VCF and BAM formats.</readme>
+        <repository changeset_revision="8359d121547e" name="package_bedtools_2_22" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
-
-
-