comparison flankBed.xml @ 59:539958feb49c draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"

58:ed6f66aed1f9

<tool id="bedtools_flankbed" name="bedtools FlankBed" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>create new intervals from the flanks of existing intervals</description>
    <expand macro="bio_tools" />
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
flankBed
$pct

    </outputs>
    <tests>
        <test>
            <param name="input" value="a.bed" ftype="bed" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="mm9_chr1.len"/>
            <param name="addition_select" value="b"/>
            <param name="b" value="5"/>
            <output name="output" file="flankBed_result1.bed" ftype="bed" />
        </test>
        <test>
            <param name="input" value="a.bed" ftype="bed" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="mm9_chr1.len"/>
            <param name="addition_select" value="lr"/>
            <param name="l" value="2"/>
            <param name="r" value="3"/>
            <output name="output" file="flankBed_result2.bed" ftype="bed" />
        </test>

59:539958feb49c

<tool id="bedtools_flankbed" name="bedtools FlankBed" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>create new intervals from the flanks of existing intervals</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
flankBed
$pct

    </outputs>
    <tests>
        <test>
            <param name="input" value="a.bed" ftype="bed" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="mm9_chr1.len" ftype="tabular"/>
            <param name="addition_select" value="b"/>
            <param name="b" value="5"/>
            <output name="output" file="flankBed_result1.bed" ftype="bed" />
        </test>
        <test>
            <param name="input" value="a.bed" ftype="bed" />
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="mm9_chr1.len" ftype="tabular"/>
            <param name="addition_select" value="lr"/>
            <param name="l" value="2"/>
            <param name="r" value="3"/>
            <output name="output" file="flankBed_result2.bed" ftype="bed" />
        </test>