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comparison mapBed.xml @ 14:38516915ccaf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 936ca4b4641eae2bdfa93885f35f5a9263f9dae1-dirty
author iuc
date Sat, 23 May 2015 08:47:25 -0400
parents bdb4509d9482
children ce2f9b4e4e7c
comparison
equal deleted inserted replaced
13:bdb4509d9482 14:38516915ccaf
28 <expand macro="overlap" /> 28 <expand macro="overlap" />
29 <param name="reciprocal" type="boolean" checked="false" truevalue="-r" falsevalue="" 29 <param name="reciprocal" type="boolean" checked="false" truevalue="-r" falsevalue=""
30 label="Require reciprocal overlap" 30 label="Require reciprocal overlap"
31 help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" /> 31 help="If set, the overlap between the BAM alignment and the BED interval must affect the above fraction of both the alignment and the BED interval. (-r)" />
32 <expand macro="strand2" /> 32 <expand macro="strand2" />
33 <expand macro="c_and_o_argument" /> 33 <expand macro="c_and_o_argument">
34 <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" />
35 </expand>
34 <expand macro="split" /> 36 <expand macro="split" />
35 <expand macro="print_header" /> 37 <expand macro="print_header" />
36 <conditional name="genome"> 38 <conditional name="genome">
37 <param name="genome_choose" type="boolean" checked="false" truevalue="-g" falsevalue="" 39 <param name="genome_choose" type="boolean" checked="false" truevalue="-g" falsevalue=""
38 label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." help="(-g)" /> 40 label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." help="(-g)" />