view test-data/test_output.log @ 0:117d42db0a30 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beagle commit ccb3f8eaa99490f8513200e45fc59e5011fb41e8"

beagle.21Apr21.304.jar (version 5.2)
Copyright (C) 2014-2021 Brian L. Browning
Enter "java -jar beagle.21Apr21.304.jar" to list command line argument
Start time: 08:46 PM GMT on 26 Jun 2021

Command line: java -Xmx989m -jar beagle.21Apr21.304.jar
  gt=/tmp/tmpoahokk9w/files/e/9/3/dataset_e93c5cb3-373e-4432-80ab-47ff1068bc9f.dat
  chrom=22:100-
  ne=1000000
  window=40.0
  overlap=2.0
  seed=1
  err=0.02
  burnin=3
  iterations=12
  phase-states=280
  impute=true
  imp-states=1600
  imp-segment=6.0
  imp-step=0.1
  cluster=0.005
  ap=false
  gp=false
  out=out
  nthreads=1

No genetic map is specified: using 1 cM = 1 Mb

Reference samples:                    0
Study     samples:                  191

Window 1 [22:20000086-20016908]
Reference markers:                  223
Study     markers:                  223

Burnin  iteration 1:           1 second

Burnin  iteration 2:           0 seconds

Burnin  iteration 3:           0 seconds

Phasing iteration 1:           0 seconds

Phasing iteration 2:           0 seconds

Phasing iteration 3:           0 seconds

Phasing iteration 4:           0 seconds

Phasing iteration 5:           0 seconds

Phasing iteration 6:           0 seconds

Phasing iteration 7:           0 seconds

Phasing iteration 8:           0 seconds

Phasing iteration 9:           0 seconds

Phasing iteration 10:          0 seconds

Phasing iteration 11:          0 seconds

Phasing iteration 12:          0 seconds

Cumulative Statistics:

Study     markers:                  223

Haplotype phasing time:        2 seconds
Total time:                    3 seconds

End time: 08:46 PM GMT on 26 Jun 2021
beagle.21Apr21.304.jar finished