Mercurial > repos > iuc > bcftools_plugin_setgt

diff bcftools_plugin_setgt.xml @ 5:b4477c34076a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 10853682ffb2e9776256bb63c899ef5c5fe0007e
author: iuc
date: Thu, 13 Apr 2017 16:30:28 -0400
parents: 788510a3597a
children: 1e4d7ee505f1
--- a/bcftools_plugin_setgt.xml	Sat Mar 11 17:54:47 2017 -0500
+++ b/bcftools_plugin_setgt.xml	Thu Apr 13 16:30:28 2017 -0400
@@ -13,6 +13,7 @@
 @PREPARE_INPUT_FILE@
 #set $section = $sec_restrict
 @PREPARE_TARGETS_FILE@
+@PREPARE_REGIONS_FILE@
 bcftools plugin @EXECUTABLE@
 
 ## VCF input section
@@ -33,7 +34,7 @@
 --
 -t '$section.target_gt'
 --new-gt '$section.new_gt'
-> "$output_file"
+> '$output_file'
 ]]>
     </command>
     <inputs>