Mercurial > repos > iuc > bbtools_bbduk

annotate test-data/cv_output.gff @ 7:4f4e34a75de9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit b3c4dcad33ad59a50c953f409896dc2279e776ab
author iuc
date Thu, 13 Feb 2025 12:06:47 +0000
parents ed2c532794c1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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diff changeset
1 ##gff-version 3
ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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2 #BBMapVersion 39.08
0
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
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3 #ploidy 2
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
iuc
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4 #rarity 1.00000
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
iuc
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5 #minAlleleFraction 0.1000
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
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6 #reads 2207
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
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7 #pairedReads 0
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
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8 #properlyPairedReads 0
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ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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9 #readLengthAvg 145.46
0
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
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10 #properPairRate 0.0000
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ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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11 #totalQualityAvg 36.5800
ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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12 #mapqAvg 43.35
ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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13 #reference /home/bag/projects/code/tools-iuc/tools/bbtools/test-data/NC_002945v4.fasta
0
132af91f11b9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit ae31a678eb5c04fb74b94161db95705d597990ad"
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14 #seqid source type start end score strand phase attributes
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ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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15 NC_002945.4 . sequence_variant_obs 976327 976327 0.87 + . ID=SUB T
ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
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16 NC_002945.4 . sequence_variant_obs 1501932 1501932 0.92 + . ID=SUB C
ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
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17 NC_002945.4 . sequence_variant_obs 3380579 3380579 0.92 + . ID=SUB G
ed2c532794c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bbtools commit cd59ba2c349865259b92302a1d70e103b8a5e3cb
iuc
parents: 0
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18 NC_002945.4 . sequence_variant_obs 3646293 3646293 0.89 + . ID=SUB A