# HG changeset patch
# User iuc
# Date 1683627193 0
# Node ID f58d3e818ebc0b1969a68fc279945d2984cd743d
# Parent  4a793969e0397603f0f414c446854d34699ca892
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abyss commit dff6775ae41cbd3da949bbc57c4f79a11cd56ea6

diff -r 4a793969e039 -r f58d3e818ebc abyss-pe.xml
--- a/abyss-pe.xml	Wed Jan 12 17:04:27 2022 +0000
+++ b/abyss-pe.xml	Tue May 09 10:13:13 2023 +0000
@@ -1,11 +1,8 @@
 <tool id="abyss-pe" name="ABySS" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>de novo sequence assembler</description>
-    <xrefs>
-        <xref type="bio.tools">abyss</xref>
-    </xrefs>
     <macros>
-        <token name="@TOOL_VERSION@">2.3.4</token>
-        <token name="@VERSION_SUFFIX@">1</token>
+        <token name="@TOOL_VERSION@">2.3.6</token>
+        <token name="@VERSION_SUFFIX@">0</token>
         <xml name="reads_conditional">
             <conditional name="reads">
                 <param name="reads_selector" type="select" label="Type of paired-end datasets">
@@ -26,6 +23,9 @@
             </conditional>
         </xml>
     </macros>
+    <xrefs>
+        <xref type="bio.tools">abyss</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">abyss</requirement>
         <requirement type="package" version="0.7.17">bwa</requirement>
@@ -219,7 +219,7 @@
         <data name="scaffolds" format="fasta" label="${tool.name} on ${on_string}: scaffolds" from_work_dir="abyss-scaffolds.fa">
             <filter>lib_repeat or mp_repeat</filter>
         </data>
-        <data name="long_scaffolds" format="fasta" label="${tool.name} on ${on_string}: scaffolds" from_work_dir="abyss-long-scaffs.fa">
+        <data name="long_scaffolds" format="fasta" label="${tool.name} on ${on_string}: long scaffolds" from_work_dir="abyss-long-scaffs.fa">
             <filter>long_seqs</filter>
         </data>
         <data name="indels" format="fasta" label="${tool.name} on ${on_string}: indels" from_work_dir="abyss-indel.fa" />