Mercurial > repos > iracooke > xtandem
changeset 10:b9d1dcd21d03 draft
Uploaded
| author | iracooke |
|---|---|
| date | Wed, 21 May 2014 03:03:40 -0400 |
| parents | d7d120581e71 |
| children | b2f23c78d994 |
| files | tandem.xml |
| diffstat | 1 files changed, 1 insertions(+), 29 deletions(-) [+] |
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--- a/tandem.xml Wed May 21 03:03:26 2014 -0400 +++ b/tandem.xml Wed May 21 03:03:40 2014 -0400 @@ -109,37 +109,9 @@ <param name="cleavage_semi" type="boolean" label="Allow semi-cleaved peptides" help="This can increase search time dramatically" truevalue="" falsevalue="--no-cleavage-semi" /> - - <!--W, [2014-03-18T23:22:33.477692 #5258] WARN -- : Use one of the following cleavage site specifications: -W, [2014-03-18T23:22:33.477720 #5258] WARN -- : argc - [R]|{P} -W, [2014-03-18T23:22:33.477744 #5258] WARN -- : aspn - [X]|[D] -W, [2014-03-18T23:22:33.477768 #5258] WARN -- : chymotrypsin - [FLMWY]|{P} -W, [2014-03-18T23:22:33.477791 #5258] WARN -- : clostripain - [R]|[X] -W, [2014-03-18T23:22:33.477814 #5258] WARN -- : cnbr - [M]|{P} -W, [2014-03-18T23:22:33.477838 #5258] WARN -- : elastase - [AGILV]|{P} -W, [2014-03-18T23:22:33.477907 #5258] WARN -- : formicacid - [D]|{P} -W, [2014-03-18T23:22:33.477931 #5258] WARN -- : gluc - [DE]|{P} -W, [2014-03-18T23:22:33.477954 #5258] WARN -- : gluc_bicarb - [E]|{P} -W, [2014-03-18T23:22:33.477977 #5258] WARN -- : iodosobenzoate - [W]|[X] -W, [2014-03-18T23:22:33.478000 #5258] WARN -- : lysc - [K]|{P} -W, [2014-03-18T23:22:33.478029 #5258] WARN -- : lysc-p - [K]|[X] -W, [2014-03-18T23:22:33.478112 #5258] WARN -- : lysn - [X]|[K] -W, [2014-03-18T23:22:33.478138 #5258] WARN -- : lysn_promisc - [X]|[AKRS] -W, [2014-03-18T23:22:33.478172 #5258] WARN -- : nonspecific - [X]|[X] -W, [2014-03-18T23:22:33.478196 #5258] WARN -- : pepsina - [FL]|[X] -W, [2014-03-18T23:22:33.478259 #5258] WARN -- : protein_endopeptidase - [P]|[X] -W, [2014-03-18T23:22:33.478285 #5258] WARN -- : staph_protease - [E]|[X] -W, [2014-03-18T23:22:33.478309 #5258] WARN -- : tca - [FMWY]|{P},[KR]|{P},[X]|[D] -W, [2014-03-18T23:22:33.478333 #5258] WARN -- : trypsin - [KR]|{P} -W, [2014-03-18T23:22:33.478356 #5258] WARN -- : trypsin/chymotrypsin - [FKLMRWY]|{P} -W, [2014-03-18T23:22:33.478380 #5258] WARN -- : trypsin/cnbr - [KR]|{P},[M]|{P} -W, [2014-03-18T23:22:33.478403 #5258] WARN -- : trypsin_gluc - [DEKR]|{P}--> - - <param name="enzyme" type="select" format="text"> <label>Enzyme</label> - <option value="trypsin">Trypsin - [KR]|{P}</option> - <option value="argc">argc - [R]|{P}</option> + <option value="Trypsin">Trypsin</option> </param> <param name="fragment_ion_tol" help="Fragment Ion Tolerance in Daltons" type="float" value="0.65" min="0" max="10000" label="Fragment ion tolerance"/>