# HG changeset patch
# User iracooke
# Date 1432100151 14400
# Node ID 276ff5e1732c0ee93a6101bb58e73f0d2e54ce22
# Parent c10b5582121279645a220f6113a9836c05cdb6a8
Add spectrast_filter tool
diff -r c10b55821212 -r 276ff5e1732c repository_dependencies.xml
--- a/repository_dependencies.xml Tue May 19 22:36:35 2015 -0400
+++ b/repository_dependencies.xml Wed May 20 01:35:51 2015 -0400
@@ -1,4 +1,4 @@
-
+
diff -r c10b55821212 -r 276ff5e1732c spectrast_create.xml
--- a/spectrast_create.xml Tue May 19 22:36:35 2015 -0400
+++ b/spectrast_create.xml Wed May 20 01:35:51 2015 -0400
@@ -26,7 +26,13 @@
--instrument-acquisition $instrument_acquisition
- -o output
+ -o library;
+
+ mkdir -p $output.extra_files_path;
+
+ cp library.splib library.spidx library.pepidx $output.extra_files_path/;
+
+ echo "Spectral Library Primary File" > $output
@@ -41,13 +47,12 @@
-
-
+
-
+
diff -r c10b55821212 -r 276ff5e1732c spectrast_filter.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/spectrast_filter.xml Wed May 20 01:35:51 2015 -0400
@@ -0,0 +1,62 @@
+
+
+ iracooke/protk-1.4.2
+ protk
+ trans_proteomic_pipeline
+
+
+ Filter and Manipulate Spectral Libraries
+
+
+
+
+
+
+ spectrast_filter.rb
+
+ #for $splib_file in $splib_files:
+ ${splib_file.extra_files_path/library.splib}
+ #end for
+
+ --merge $merge
+
+ --replicates $replicates
+
+ -o library;
+
+ mkdir -p $output.extra_files_path;
+
+ cp library.splib library.spidx library.pepidx $output.extra_files_path/;
+
+
+ echo "Spectral Library Primary File" > $output
+
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