comparison spectrast_filter.xml @ 11:cf953fb3f0c0 draft

Fix cheetah

10:76301c798bd3

    <stdio>
        <exit_code range="1:" level="fatal" description="Job Failed" />
    </stdio>

	<command>
        spectrast_filter.rb

        #for $splib_file in $splib_files:
        ${splib_file.extra_files_path/library.splib}
        #end for

        --merge $merge

        --replicates $replicates

        -o 'library';

        mkdir -p ${output.extra_files_path};

        cp library.splib library.spidx library.pepidx  ${output.extra_files_path}/;

11:cf953fb3f0c0

    <stdio>
        <exit_code range="1:" level="fatal" description="Job Failed" />
    </stdio>

	<command>
        spectrast_filter.rb  --merge $merge


        #for $splib_file in $splib_files:
        ${splib_file.extra_files_path}/library.splib
        #end for


        --replicates $replicates

        -o library;

        mkdir -p ${output.extra_files_path};

        cp library.splib library.spidx library.pepidx  ${output.extra_files_path}/;