Mercurial > repos > iracooke > protk_proteogenomics
comparison test-data/augustus_sample.gff @ 0:956bfab63005 draft default tip
planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
| author | iracooke |
|---|---|
| date | Tue, 20 Oct 2015 20:36:03 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:956bfab63005 |
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| 1 ##gff-version 3 | |
| 2 # This output was generated with AUGUSTUS (version 2.5.5). | |
| 3 # AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mario.stanke@uni-greifswald.de) | |
| 4 # and Oliver Keller (keller@cs.uni-goettingen.de). | |
| 5 # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), | |
| 6 # Using native and syntenically mapped cDNA alignments to improve de novo gene finding | |
| 7 # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 | |
| 8 # No extrinsic information on sequences given. | |
| 9 # Initialising the parameters ... | |
| 10 # venturia_inaequalis version. Use default transition matrix. | |
| 11 # Looks like /home/virtualdan/winshare/vp/final_vp_assembly/Pirina.100.fasta is in fasta format. | |
| 12 # We have hints for 0 sequences and for 0 of the sequences in the input set. | |
| 13 # | |
| 14 # ----- prediction on sequence number 1 (length = 532736, name = scaffold14) ----- | |
| 15 # | |
| 16 # Predicted genes for sequence number 1 on both strands | |
| 17 # start gene g1 | |
| 18 scaffold14 AUGUSTUS gene 2517 3803 . - . ID=g1 | |
| 19 scaffold14 AUGUSTUS transcript 2517 3803 0.92 - . ID=g1.t1;Parent=g1 | |
| 20 scaffold14 AUGUSTUS stop_codon 2517 2519 . - 0 Parent=g1.t1 | |
| 21 scaffold14 AUGUSTUS CDS 2517 3803 0.92 - 0 ID=g1.t1.cds;Parent=g1.t1 | |
| 22 scaffold14 AUGUSTUS start_codon 3801 3803 . - 0 Parent=g1.t1 | |
| 23 # coding sequence = [atggcagggctagcagcaggcattgttggtgtcgtgtcagctggtaccaaagtcgccatcgtcctttcgcagtatggca | |
| 24 # atgaagtgggagcagctggccaagaagcgcgaatgatcgcgtcggaaatccgaggatcatgcacagttctcacgaccctccactcgacattgaaacat | |
| 25 # gtccagacatcgccgtactacgcgaattgcgctgaactgatcagcgatatgaccgatgcgagtctggagatgtatacggaaatcatggaggtcgtcga | |
| 26 # gggattgtcggcaatgacgagcgacagcaagatgaatttgaggaagcggctgctgtggacctttcaaaagccgaagatcgttatgttgagaacggcac | |
| 27 # tggaggcctatagatcgaatttggctcttatgcttggaacgttggatatggctgagaaggcctcgcgaagctacgttgctttgactgaggagattgtg | |
| 28 # caggaagatgaaatggactgcgcaaagcttcaagacctacaactggaacaacaaatgtctctgcttaaggttcaagagttggacccggaaagtatcga | |
| 29 # gcttccgcctagcccaacgggcgcagggcggggattttgggggtcgtcaaataaagaatctgcatttccagtcgaggagggttatgtcagtgccctga | |
| 30 # gagaagagattgcgactctcaagaggagccgaactgtctacctgacagaccccgaaaaggtgcgcgatcgagtagctcgacagagcaatcgtttgtcc | |
| 31 # caactcctcgtccaggatcagaggagaatttcgcgaagatggtctcaatccctgccagagagacgtatgagcatgtacagcgacttggcagcagagag | |
| 32 # gtcacggtcgcctacgagtacgcctggcagctcatcagcctccccgagcgaatccagcgatgatctatccagcgattatgcccaggtgaacgaaccca | |
| 33 # tggttagagacttttatgcttggatgtctgcgcaaactggcgttcagcggagcattgtgcttcgacagctgcaagcgcggtttggtgatgggcgaggg | |
| 34 # acaactgtccgcaagcccgtcaacggtgttggaatccatccaggagcaagcgaggacacactatgcgccgatgtctccaagcttgaattggagaagga | |
| 35 # tgcagttgcagcagagacctacgagagacaggctgagccagctcctgtggttggagccagtaaggaaaagaagagctcgttcttgaagaggtcaatgg | |
| 36 # ggttgaaaagacgaacgccgtcagcgtcgtga] | |
| 37 # protein sequence = [MAGLAAGIVGVVSAGTKVAIVLSQYGNEVGAAGQEARMIASEIRGSCTVLTTLHSTLKHVQTSPYYANCAELISDMTD | |
| 38 # ASLEMYTEIMEVVEGLSAMTSDSKMNLRKRLLWTFQKPKIVMLRTALEAYRSNLALMLGTLDMAEKASRSYVALTEEIVQEDEMDCAKLQDLQLEQQM | |
| 39 # SLLKVQELDPESIELPPSPTGAGRGFWGSSNKESAFPVEEGYVSALREEIATLKRSRTVYLTDPEKVRDRVARQSNRLSQLLVQDQRRISRRWSQSLP | |
| 40 # ERRMSMYSDLAAERSRSPTSTPGSSSASPSESSDDLSSDYAQVNEPMVRDFYAWMSAQTGVQRSIVLRQLQARFGDGRGTTVRKPVNGVGIHPGASED | |
| 41 # TLCADVSKLELEKDAVAAETYERQAEPAPVVGASKEKKSSFLKRSMGLKRRTPSAS] | |
| 42 # end gene g1 | |
| 43 ### | |
| 44 # start gene g2 | |
| 45 scaffold14 AUGUSTUS gene 6798 7541 . - . ID=g2 | |
| 46 scaffold14 AUGUSTUS transcript 6798 7541 0.56 - . ID=g2.t1;Parent=g2 | |
| 47 scaffold14 AUGUSTUS stop_codon 6798 6800 . - 0 Parent=g2.t1 | |
| 48 scaffold14 AUGUSTUS intron 6936 6986 1 - . Parent=g2.t1 | |
| 49 scaffold14 AUGUSTUS intron 7068 7117 1 - . Parent=g2.t1 | |
| 50 scaffold14 AUGUSTUS intron 7275 7401 0.63 - . Parent=g2.t1 | |
| 51 scaffold14 AUGUSTUS CDS 6798 6935 0.97 - 0 ID=g2.t1.cds;Parent=g2.t1 | |
| 52 scaffold14 AUGUSTUS CDS 6987 7067 1 - 0 ID=g2.t1.cds;Parent=g2.t1 | |
| 53 scaffold14 AUGUSTUS CDS 7118 7274 1 - 1 ID=g2.t1.cds;Parent=g2.t1 | |
| 54 scaffold14 AUGUSTUS CDS 7402 7541 0.59 - 0 ID=g2.t1.cds;Parent=g2.t1 | |
| 55 scaffold14 AUGUSTUS start_codon 7539 7541 . - 0 Parent=g2.t1 | |
| 56 # coding sequence = [atgcctaccagattatccaacacccgcaagcaccgcggtcacgtctctgccggtcacggtcgtgtcggcaagcagtatg | |
| 57 # tcacacccctcagcaaccctctcctcgacgttgaacggatcttccaattttcgccattgcaccgcaagcatcccggtggtcgtggtctcgctggtggt | |
| 58 # cagcaccaccacaggaccaacatggataaataccatccaggttacttcggaaaggtcggtatgcgatacttccacaagcaaggcaaccacttctggaa | |
| 59 # gccaaccatcaacttggacaagctttggtccctcgttcctctcgagcagcgcgaaaagtacatctccaacaagaagtccgacacagctccagttctcg | |
| 60 # acctcctctccttcggttactcaaaggtcctcggaaagggtcgtctcccagaaatcccactcgtcgtccgcgcccgatacttctccgcagaagccgaa | |
| 61 # aagaagatcaaggaagctggcggagtcgtccagttggtcggttag] | |
| 62 # protein sequence = [MPTRLSNTRKHRGHVSAGHGRVGKQYVTPLSNPLLDVERIFQFSPLHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKV | |
| 63 # GMRYFHKQGNHFWKPTINLDKLWSLVPLEQREKYISNKKSDTAPVLDLLSFGYSKVLGKGRLPEIPLVVRARYFSAEAEKKIKEAGGVVQLVG] | |
| 64 scaffold14 AUGUSTUS transcript 6798 7541 0.32 - . ID=g2.t2;Parent=g2 | |
| 65 scaffold14 AUGUSTUS stop_codon 6798 6800 . - 0 Parent=g2.t2 | |
| 66 scaffold14 AUGUSTUS intron 6936 6986 1 - . Parent=g2.t2 | |
| 67 scaffold14 AUGUSTUS intron 7068 7117 1 - . Parent=g2.t2 | |
| 68 scaffold14 AUGUSTUS intron 7275 7467 0.37 - . Parent=g2.t2 | |
| 69 scaffold14 AUGUSTUS CDS 6798 6935 0.97 - 0 ID=g2.t2.cds;Parent=g2.t2 | |
| 70 scaffold14 AUGUSTUS CDS 6987 7067 1 - 0 ID=g2.t2.cds;Parent=g2.t2 | |
| 71 scaffold14 AUGUSTUS CDS 7118 7274 1 - 1 ID=g2.t2.cds;Parent=g2.t2 | |
| 72 scaffold14 AUGUSTUS CDS 7468 7541 0.33 - 0 ID=g2.t2.cds;Parent=g2.t2 | |
| 73 scaffold14 AUGUSTUS start_codon 7539 7541 . - 0 Parent=g2.t2 | |
| 74 # coding sequence = [atgcctaccagattatccaacacccgcaagcaccgcggtcacgtctctgccggtcacggtcgtgtcggcaagcaccgca | |
| 75 # agcatcccggtggtcgtggtctcgctggtggtcagcaccaccacaggaccaacatggataaataccatccaggttacttcggaaaggtcggtatgcga | |
| 76 # tacttccacaagcaaggcaaccacttctggaagccaaccatcaacttggacaagctttggtccctcgttcctctcgagcagcgcgaaaagtacatctc | |
| 77 # caacaagaagtccgacacagctccagttctcgacctcctctccttcggttactcaaaggtcctcggaaagggtcgtctcccagaaatcccactcgtcg | |
| 78 # tccgcgcccgatacttctccgcagaagccgaaaagaagatcaaggaagctggcggagtcgtccagttggtcggttag] | |
| 79 # protein sequence = [MPTRLSNTRKHRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKVGMRYFHKQGNHFWKPTINLDKL | |
| 80 # WSLVPLEQREKYISNKKSDTAPVLDLLSFGYSKVLGKGRLPEIPLVVRARYFSAEAEKKIKEAGGVVQLVG] | |
| 81 # end gene g2 | |
| 82 ### | |
| 83 # start gene g3 | |
| 84 scaffold14 AUGUSTUS gene 8211 8576 0.98 + . ID=g3 | |
| 85 scaffold14 AUGUSTUS transcript 8211 8576 0.98 + . ID=g3.t1;Parent=g3 | |
| 86 scaffold14 AUGUSTUS start_codon 8211 8213 . + 0 Parent=g3.t1 | |
| 87 scaffold14 AUGUSTUS CDS 8211 8576 0.98 + 0 ID=g3.t1.cds;Parent=g3.t1 | |
| 88 scaffold14 AUGUSTUS stop_codon 8574 8576 . + 0 Parent=g3.t1 | |
| 89 # coding sequence = [atgtcaaaacaactctccacaaaggaagtttccacacacaaatcagtcgaagagggtctctggatcataatcgacaacg | |
| 90 # aagtctacgacgtcacaaaattcatcgaagaacaccccggcggtccaaagatcctaaagcgcgtcggtgggaaagatgccagcaagcaattctggaag | |
| 91 # gcaagcaatcccatccccttacaaccatctcaccaaaaacatccactctcacaccctctaccatcatctgttcttataggtgcacgtgtgctaacctt | |
| 92 # atccgcgtcacagtaccacagcgacaacgtcctaaaaaaatacaaacctaaactcatgatcggaagcgtcaaagaagacgccaagttatag] | |
| 93 # protein sequence = [MSKQLSTKEVSTHKSVEEGLWIIIDNEVYDVTKFIEEHPGGPKILKRVGGKDASKQFWKASNPIPLQPSHQKHPLSHP | |
| 94 # LPSSVLIGARVLTLSASQYHSDNVLKKYKPKLMIGSVKEDAKL] | |
| 95 # end gene g3 | |
| 96 ### | |
| 97 # start gene g4 | |
| 98 scaffold14 AUGUSTUS gene 9661 12081 . - . ID=g4 | |
| 99 scaffold14 AUGUSTUS transcript 9661 12081 0.96 - . ID=g4.t1;Parent=g4 | |
| 100 scaffold14 AUGUSTUS stop_codon 9661 9663 . - 0 Parent=g4.t1 | |
| 101 scaffold14 AUGUSTUS intron 10248 10299 0.97 - . Parent=g4.t1 | |
| 102 scaffold14 AUGUSTUS intron 10533 10666 0.99 - . Parent=g4.t1 | |
| 103 scaffold14 AUGUSTUS CDS 9661 10247 0.97 - 2 ID=g4.t1.cds;Parent=g4.t1 | |
| 104 scaffold14 AUGUSTUS CDS 10300 10532 0.98 - 1 ID=g4.t1.cds;Parent=g4.t1 | |
| 105 scaffold14 AUGUSTUS CDS 10667 12081 0.98 - 0 ID=g4.t1.cds;Parent=g4.t1 | |
| 106 scaffold14 AUGUSTUS start_codon 12079 12081 . - 0 Parent=g4.t1 | |
| 107 # coding sequence = [atggagacctatcaaggcaaggtccagacgccgcaggacgccatcatccttttcgaagcatgtcgactaggcctcacac | |
| 108 # cgcgtgtgcagaggagactatcggagaaggagaggcaacagatcaaatctggctcggtattcgtgtgggatgaacgcgaagctggcatgaggaggtgg | |
| 109 # actgacgggaaatcatggagcgcaagtcgcgtatctggtagctttctcacctatcgcgaaatggaaggaaagagaggagggactggcctgcctgcagg | |
| 110 # cgctacaccacctgctctcaggaagtcaagcagtggaacgagaagctccgccaactcgaacaatggcggttcagaggacgacgaggaaggaccagacg | |
| 111 # ggtacaagtacaaggccgacggactcatgaaacagtctttcagtatcaccacctcagacggccgacatcttcacctcatcagctacttcgcaagaaat | |
| 112 # cctgcacatccattaaaacaaccatccacggatccgcaactgcgcaatattgttccgcaaaaaggcatgtaccccgaggctacagtcaatgaagccac | |
| 113 # gaacataccccctgtcactcgaggacctatgggggggacatcgccgcatcctcctgcgcatccgcctccacagatgtacgtcgcagcctatccatttc | |
| 114 # caccgcctccaggataccaagcaggaccaatgcatcatcactaccctccacaaggctggccgccaagcccgggacatctaggccctggaggagtacca | |
| 115 # cctggagcattttattatcctgctcctcctccgggatatgtttatccgaattcaccatacgcgccatccccatatccgtatggccaccctcctccgca | |
| 116 # cgcgcaggagagaggtccacctccgccgcctcaatcaagtctgccccctctgagtggcccgatacatccctctgctgggcaatgggcccctccagctg | |
| 117 # cgcgtacatcctcggccacgtatgcgcaaagcaggcctcctacatccttgcaagagagctacagccgctcggcagcagaacagagacaagaagagaca | |
| 118 # tcgcgcgctcctggtccgcagctagcacccgtagttgccttccagaacaaacctccgactccaccagagagcaggaatggcgcgacaccgcctgcgaa | |
| 119 # gagctacccaaccgaccctctaccaacccgcgaaactaatactactactggacctacaaagacctttcccagtatcaaagcattgattaacggcgatg | |
| 120 # tgataacatcgagacgagaagaggaccggacacgcactcgatctcgcagtcgaagcccgctaggaagcagaatccgcgatgttcccagtgcgatggca | |
| 121 # gccggaggccgagagagagaccgtagcgatttgaagaggttggatgcccaacttctcaaatcttctggtctcgagtcttcagatggcaacgggaagct | |
| 122 # tgcacaaaaccaccctggtgcacacagcaagccaatttcgagaagtatcgatgttattgcaaaagtcatccccggtcatgttcttgccacgatgcctg | |
| 123 # aaaatatcgaacttgaacctcaagacttcggaagatggccactacaatcgggtaacggacggtatacggagatacagccaaccccaacaagttccgaa | |
| 124 # gatgggcaaaagctgcaacttcagacgatgcccgacgataacttcgggcgggttatggaacctagcctgaaggaagttcttgatggcatgactggaag | |
| 125 # acagcgaggtctgggccagctcgggcaaatgcgtcttactactcaagatgtcaatagcaaacgatttgatctgtaccaagctctcaaatacgctacac | |
| 126 # catcatccaccatcactcggattttgaatgaattgaagactggtgtcctgccctcagaaaagttgctgcgagaaacgaatatcggcgtggaagttgac | |
| 127 # gggctgcgctggttgacaaaaatcccagttatcgcaaagctcagcaccgagatcgtcaatgaatggcgcactgttatagagtctggtcctcgtcctca | |
| 128 # tccctcaaacgatgagatctttgggccttactggcggcttagcaacaatttttacgtttctaatcatggcagcgagagcccgtttcccagactatcac | |
| 129 # ttggaaacgagaagcttggtcttggttccctgaacgacaacaagaatctcggaacagaaaatggaatgatacccaagaccaaggaggataggttataa] | |
| 130 # protein sequence = [METYQGKVQTPQDAIILFEACRLGLTPRVQRRLSEKERQQIKSGSVFVWDEREAGMRRWTDGKSWSASRVSGSFLTYR | |
| 131 # EMEGKRGGTGLPAGATPPALRKSSSGTRSSANSNNGGSEDDEEGPDGYKYKADGLMKQSFSITTSDGRHLHLISYFARNPAHPLKQPSTDPQLRNIVP | |
| 132 # QKGMYPEATVNEATNIPPVTRGPMGGTSPHPPAHPPPQMYVAAYPFPPPPGYQAGPMHHHYPPQGWPPSPGHLGPGGVPPGAFYYPAPPPGYVYPNSP | |
| 133 # YAPSPYPYGHPPPHAQERGPPPPPQSSLPPLSGPIHPSAGQWAPPAARTSSATYAQSRPPTSLQESYSRSAAEQRQEETSRAPGPQLAPVVAFQNKPP | |
| 134 # TPPESRNGATPPAKSYPTDPLPTRETNTTTGPTKTFPSIKALINGDVITSRREEDRTRTRSRSRSPLGSRIRDVPSAMAAGGRERDRSDLKRLDAQLL | |
| 135 # KSSGLESSDGNGKLAQNHPGAHSKPISRSIDVIAKVIPGHVLATMPENIELEPQDFGRWPLQSGNGRYTEIQPTPTSSEDGQKLQLQTMPDDNFGRVM | |
| 136 # EPSLKEVLDGMTGRQRGLGQLGQMRLTTQDVNSKRFDLYQALKYATPSSTITRILNELKTGVLPSEKLLRETNIGVEVDGLRWLTKIPVIAKLSTEIV | |
| 137 # NEWRTVIESGPRPHPSNDEIFGPYWRLSNNFYVSNHGSESPFPRLSLGNEKLGLGSLNDNKNLGTENGMIPKTKEDRL] | |
| 138 # end gene g4 | |
| 139 ### | |
| 140 # start gene g5 | |
| 141 scaffold14 AUGUSTUS gene 11112 11486 0.43 + . ID=g5 | |
| 142 scaffold14 AUGUSTUS transcript 11112 11486 0.43 + . ID=g5.t1;Parent=g5 | |
| 143 scaffold14 AUGUSTUS start_codon 11112 11114 . + 0 Parent=g5.t1 | |
| 144 scaffold14 AUGUSTUS CDS 11112 11486 0.43 + 0 ID=g5.t1.cds;Parent=g5.t1 | |
| 145 scaffold14 AUGUSTUS stop_codon 11484 11486 . + 0 Parent=g5.t1 | |
| 146 # coding sequence = [atgtacgcgcagctggaggggcccattgcccagcagagggatgtatcgggccactcagagggggcagacttgattgagg | |
| 147 # cggcggaggtggacctctctcctgcgcgtgcggaggagggtggccatacggatatggggatggcgcgtatggtgaattcggataaacatatcccggag | |
| 148 # gaggagcaggataataaaatgctccaggtggtactcctccagggcctagatgtcccgggcttggcggccagccttgtggagggtagtgatgatgcatt | |
| 149 # ggtcctgcttggtatcctggaggcggtggaaatggataggctgcgacgtacatctgtggaggcggatgcgcaggaggatgcggcgatgtcccccccat | |
| 150 # ag] | |
| 151 # protein sequence = [MYAQLEGPIAQQRDVSGHSEGADLIEAAEVDLSPARAEEGGHTDMGMARMVNSDKHIPEEEQDNKMLQVVLLQGLDVP | |
| 152 # GLAASLVEGSDDALVLLGILEAVEMDRLRRTSVEADAQEDAAMSPP] | |
| 153 # end gene g5 | |
| 154 ### | |
| 155 # start gene g6 | |
| 156 scaffold14 AUGUSTUS gene 22383 25038 0.97 + . ID=g6 | |
| 157 scaffold14 AUGUSTUS transcript 22383 25038 0.97 + . ID=g6.t1;Parent=g6 | |
| 158 scaffold14 AUGUSTUS start_codon 22383 22385 . + 0 Parent=g6.t1 | |
| 159 scaffold14 AUGUSTUS intron 22637 22690 1 + . Parent=g6.t1 | |
| 160 scaffold14 AUGUSTUS intron 22778 22830 1 + . Parent=g6.t1 | |
| 161 scaffold14 AUGUSTUS intron 24145 24194 1 + . Parent=g6.t1 | |
| 162 scaffold14 AUGUSTUS CDS 22383 22636 0.97 + 0 ID=g6.t1.cds;Parent=g6.t1 | |
| 163 scaffold14 AUGUSTUS CDS 22691 22777 1 + 1 ID=g6.t1.cds;Parent=g6.t1 | |
| 164 scaffold14 AUGUSTUS CDS 22831 24144 1 + 1 ID=g6.t1.cds;Parent=g6.t1 | |
| 165 scaffold14 AUGUSTUS CDS 24195 25038 1 + 1 ID=g6.t1.cds;Parent=g6.t1 | |
| 166 scaffold14 AUGUSTUS stop_codon 25036 25038 . + 0 Parent=g6.t1 | |
| 167 # coding sequence = [atgttgatcaggtcaaatccctccttgcattaccccattacaatcacgaagctcctggcgaaaccggatcagtccgtcg | |
| 168 # acaggttcgctccgcttttctcctacacttataagactaccgtcactgaaggcaataagtatggcgatgagccaattcagttccagaaggacttcccc | |
| 169 # gccgagtttcagtccgagcttgagggtaccctacgcgtttggaagataaagcccggcgatgttctgtacgaatctggaattcaactagtcgacattga | |
| 170 # cgagccatgcactcacgatactgtttttggtggcctatgtgcgaattgtggccaagaaatggacaaactagataactatctaaccaccgagagagcct | |
| 171 # cccaacgcgccaccgtttttgcctcccacggaaacacagctctcctagtcagcaagaaggaagcaggtcggatcaatgaagaggctaaaagacgtctc | |
| 172 # ttacagggtcgcaagctttcactagttgtggatctggatcaaaccatcattcacgccactgtcgatccaactgtggctgaatggcagcaggaccccgc | |
| 173 # caacccaaactacgaggccgtaaagggggtgagacaattccagctggtagatgatggacctggaggtcgtggttgtaattactacatcaaattgcgac | |
| 174 # ccggtctggaagagtttctggaagatatcgcgaagaagtacgaacttcacatctacaccatgggaaccagggcatacgcgcaaaagatcgctgagatt | |
| 175 # gttgacccacaaaggagattttttggtgacaggatactcagcagagacgaaagtggaagcttgacgaacaagactttgcagcgcatatttcccgtcga | |
| 176 # cacagacatggttgtcattattgacgatcgtggagatgtttggcaatggagtcccaacttaatcaaagtcactccctacgacttcttcgtcggaattg | |
| 177 # gtgacatcaattctagctttttgccgaagaagaccgacagcatttccaaaaggactaggacacccccacccccaccgcctccagccgaaataccagag | |
| 178 # gacaaggagactaatgatagctttgaagaagcggagtcccccaccaacggtctagcaattgacacgaccgttatactggaagactccgatgcgccgac | |
| 179 # cttggagacacagcttgtagctatggcaggaggagacgacccctccatcatagaagagaaaagtaatacacaggcggagacattagcggcgcaagtca | |
| 180 # cagatcgccctttgatgaagaagcaggaaatgctagacaagcttgatgaagaggaggaagccaaagaaaacagtgaagaggagcgacctgtggaaacc | |
| 181 # acacccgataccaaacaacgccacaatcttctacacgatgatgatgacgaattgcgacatcttcaggccaatctggagagcatccaccgactgtttta | |
| 182 # tgaagaatacgaccagaatatcatagcaagtccgccgaggctttctcagcttcggggcgagagatcagcgaaaaagactccggtcgacaaccttgagc | |
| 183 # tcgtgccggacgtcaaagatatcatgccacggatgaaattggatgttttgaaacatgtggtcatatgcttcacgggggtcattcctcaaggcttaaac | |
| 184 # catgaaacatctgacattggcatgtgggcacgatcttttggagccagggtgtcaccaaatttgacaaagtcgaccacgcatgttgttgcccacaaaga | |
| 185 # tcgacgaacaagtaaagttcgacaggcggcaaggcatccgaacatcaaaatcgtcgcaaccagctggctactcgaatgctttgtgcagtgggttgcgg | |
| 186 # ctcctgagggaccgcatacgatcaaagtggagagcgacgagcatgatgctcatgactcgctgccattcgaggagctagaagaggcttcgatgttaact | |
| 187 # ccatcagaagacggaggcgcggacgatgctgtcttgccttcggaagtggaggaagcggacgaagaacccaattccccagtcttggacatactagaaaa | |
| 188 # cgtcgaatggggtgatctagaagatgaaatgaaagacttctacgactcggaggacgaaactgaagctgaagataccgatgaaggccatgacgaaggca | |
| 189 # tggagtcagatgcaagcgggaaaagtggacgcagctcacgaagcacctcgtcacgaaaagctaaacgcaagcgaaggacggaatcggttaacggcgac | |
| 190 # tatgaagaagcgggcgaaagcacatcggcgttgcagaagcgacggaaaatggcggcagagcgtactacaggacttgccaacgtggagacgttggagaa | |
| 191 # tccaagtgggctacccagccccgacacgacaggaccagaggaggaagcaggagagaaggacaaaggcttatcgaatggcgcagaaggcgatgtgagcg | |
| 192 # atgacattgatgaattcgagaaagacatgatggcaatgttcgacaaggacagtgatgccgaggattag] | |
| 193 # protein sequence = [MLIRSNPSLHYPITITKLLAKPDQSVDRFAPLFSYTYKTTVTEGNKYGDEPIQFQKDFPAEFQSELEGTLRVWKIKPG | |
| 194 # DVLYESGIQLVDIDEPCTHDTVFGGLCANCGQEMDKLDNYLTTERASQRATVFASHGNTALLVSKKEAGRINEEAKRRLLQGRKLSLVVDLDQTIIHA | |
| 195 # TVDPTVAEWQQDPANPNYEAVKGVRQFQLVDDGPGGRGCNYYIKLRPGLEEFLEDIAKKYELHIYTMGTRAYAQKIAEIVDPQRRFFGDRILSRDESG | |
| 196 # SLTNKTLQRIFPVDTDMVVIIDDRGDVWQWSPNLIKVTPYDFFVGIGDINSSFLPKKTDSISKRTRTPPPPPPPAEIPEDKETNDSFEEAESPTNGLA | |
| 197 # IDTTVILEDSDAPTLETQLVAMAGGDDPSIIEEKSNTQAETLAAQVTDRPLMKKQEMLDKLDEEEEAKENSEEERPVETTPDTKQRHNLLHDDDDELR | |
| 198 # HLQANLESIHRLFYEEYDQNIIASPPRLSQLRGERSAKKTPVDNLELVPDVKDIMPRMKLDVLKHVVICFTGVIPQGLNHETSDIGMWARSFGARVSP | |
| 199 # NLTKSTTHVVAHKDRRTSKVRQAARHPNIKIVATSWLLECFVQWVAAPEGPHTIKVESDEHDAHDSLPFEELEEASMLTPSEDGGADDAVLPSEVEEA | |
| 200 # DEEPNSPVLDILENVEWGDLEDEMKDFYDSEDETEAEDTDEGHDEGMESDASGKSGRSSRSTSSRKAKRKRRTESVNGDYEEAGESTSALQKRRKMAA | |
| 201 # ERTTGLANVETLENPSGLPSPDTTGPEEEAGEKDKGLSNGAEGDVSDDIDEFEKDMMAMFDKDSDAED] | |
| 202 # end gene g6 | |
| 203 ### | |
| 204 # start gene g7 | |
| 205 scaffold14 AUGUSTUS gene 25584 27469 0.98 + . ID=g7 | |
| 206 scaffold14 AUGUSTUS transcript 25584 27469 0.98 + . ID=g7.t1;Parent=g7 | |
| 207 scaffold14 AUGUSTUS start_codon 25584 25586 . + 0 Parent=g7.t1 | |
| 208 scaffold14 AUGUSTUS intron 25737 25813 0.99 + . Parent=g7.t1 | |
| 209 scaffold14 AUGUSTUS intron 26987 27043 1 + . Parent=g7.t1 | |
| 210 scaffold14 AUGUSTUS CDS 25584 25736 0.98 + 0 ID=g7.t1.cds;Parent=g7.t1 | |
| 211 scaffold14 AUGUSTUS CDS 25814 26986 1 + 0 ID=g7.t1.cds;Parent=g7.t1 | |
| 212 scaffold14 AUGUSTUS CDS 27044 27469 1 + 0 ID=g7.t1.cds;Parent=g7.t1 | |
| 213 scaffold14 AUGUSTUS stop_codon 27467 27469 . + 0 Parent=g7.t1 | |
| 214 # coding sequence = [atgaccacagacaaccccgaggctaagatggtggaagtggctcagccaacgaagatggccgtcgtgccagtcgagaagg | |
| 215 # aggttccgaaacgtccttccaagttgcgcttcatggacctctcggtcgacatcaagacattgattgtcagccatgtccatcggccaaccgaactcaag | |
| 216 # aatctctgcctcacctgctcgcagatgcacaagattaccgtccggaaactgtatcacgaagtcacgctagaggtcggttcgtctaccgatgccaaact | |
| 217 # cacctccttcatcaatccccgcaatatcggcctccctcacattcggaagctcgacctatacctggctgaggttgccgacaagtgcaaccagctacaac | |
| 218 # aggctcactttgccatacggatgatactagagttccttccagaaaacatactcgagaaattctcatggcatccttggtcgcctttcctggccgacaat | |
| 219 # ttggttctactgtacaagaagcagcgacggatggagtggttagaaggcatagctctggataggaatgttctacccgagttggaaaagcaatccgactt | |
| 220 # tgaccagatattcacaaggacgcggcggctaggactatatccggattcgcgagatgtgctcaatttctgcgccaatctgatcaagcggacaaaaaagg | |
| 221 # tcgagaagattacgctgcatgctagtttcgatgaggactcagatcggactccaattcctagccgggagctgaatgactccagcacagatcttggtttg | |
| 222 # ataactaggaccatgttcggccatatggagccattcgagaaatgcacacctctgtcgttgaaggatcttacactgcaaaagatcaatctccgttatgc | |
| 223 # cgccaattcgtattgcaaattcattgatttccgcgtcatgaaggcgctccgtatatttgggtgtccgggtgccgactccctctttgccgagctatcaa | |
| 224 # aatcgcataagttaccagagcgcttggagactctcgaattcaagcacgatgataaccaagaaaacgacgcattgaatgctttggacggcttcttgaaa | |
| 225 # ctggtttctggcatcaaagtgctcaccatggatatctgctatgcaaagcaattaccgagcgcagatggaatcattcggcattctcgaacgttgaggga | |
| 226 # attgaatgtgcacggctctcgtggagacggagaggaagaggaacttatcattgactttgacgatttcgagaagatatgcaagtcttgctcgtcaattg | |
| 227 # aacagctgtcaatggcgttcccgacgaccagtctgatccgaccgatttcagactcatttcaagcattcgagaacgcgttgggagatctcgcgaacctg | |
| 228 # attactctcaacataacgacctggcctacgaacacaccgtctacctcccgcctcccacgtaaaacctacgaaatcctcctccaatccctcgcaaactc | |
| 229 # gggtttcgaacactcgatccaccacgcatcctcgcgcacccctcctcggtcctcgaaactcgccgtcatcgctttcggttcctctgatcgcgtatacg | |
| 230 # atcgcgaagactccaagaaccagattatatttgtgaagggtaggcagactgatcctttcggaggggaaaagccattggcggtgcaggtcggttggtgt | |
| 231 # ctaaggaagtttgtggagccgaggagtgatgtgcttgatttctcgttggcgaggagttgtagaccgcctactagggaaccgccggcgagtgaggatag | |
| 232 # tgagtaa] | |
| 233 # protein sequence = [MTTDNPEAKMVEVAQPTKMAVVPVEKEVPKRPSKLRFMDLSVDIKTLIVSHVHRPTELKNLCLTCSQMHKITVRKLYH | |
| 234 # EVTLEVGSSTDAKLTSFINPRNIGLPHIRKLDLYLAEVADKCNQLQQAHFAIRMILEFLPENILEKFSWHPWSPFLADNLVLLYKKQRRMEWLEGIAL | |
| 235 # DRNVLPELEKQSDFDQIFTRTRRLGLYPDSRDVLNFCANLIKRTKKVEKITLHASFDEDSDRTPIPSRELNDSSTDLGLITRTMFGHMEPFEKCTPLS | |
| 236 # LKDLTLQKINLRYAANSYCKFIDFRVMKALRIFGCPGADSLFAELSKSHKLPERLETLEFKHDDNQENDALNALDGFLKLVSGIKVLTMDICYAKQLP | |
| 237 # SADGIIRHSRTLRELNVHGSRGDGEEEELIIDFDDFEKICKSCSSIEQLSMAFPTTSLIRPISDSFQAFENALGDLANLITLNITTWPTNTPSTSRLP | |
| 238 # RKTYEILLQSLANSGFEHSIHHASSRTPPRSSKLAVIAFGSSDRVYDREDSKNQIIFVKGRQTDPFGGEKPLAVQVGWCLRKFVEPRSDVLDFSLARS | |
| 239 # CRPPTREPPASEDSE] | |
| 240 # end gene g7 | |
| 241 ### | |
| 242 # start gene g8 | |
| 243 scaffold14 AUGUSTUS gene 29180 30106 . - . ID=g8 | |
| 244 scaffold14 AUGUSTUS transcript 29180 30106 0.76 - . ID=g8.t1;Parent=g8 | |
| 245 scaffold14 AUGUSTUS stop_codon 29180 29182 . - 0 Parent=g8.t1 | |
| 246 scaffold14 AUGUSTUS CDS 29180 30106 0.76 - 0 ID=g8.t1.cds;Parent=g8.t1 | |
| 247 scaffold14 AUGUSTUS start_codon 30104 30106 . - 0 Parent=g8.t1 | |
| 248 # coding sequence = [atgttccgagctcgcgacagtctgcgcaagctacgtagccagggtcttccatcaaccaaaatttggctccctactccta | |
| 249 # gaagccagagacttctagcatccttcgccaaatctcgcaataccttcccatggcattacgctgtccctgcagccatgggcgcggctgtgttctcgttt | |
| 250 # gtctttatcgcccaaagtcagaaaggttcactgccgtatccaggaggttgctgttctcgggatcggaagcctctactcgtatcatattacacagataa | |
| 251 # accctgcactcttagggatgtgacagatattgcaggtctcatggctgcgatgtgggtatccgagcgcataaacgaacaatcatcatcgaaggatgcac | |
| 252 # tcactgtcaaggacgaccttcttttcgatattgctagtcgcttggctttgctcagaaatggcggagtcgagggaagttctctaggaaagacagaatgc | |
| 253 # cttcaaatgtttgccgagtcggaatcgaatcgcttgaaagactcaccgtttggtcgagagagttgcgatctcagcctgatgagtggggacgccaaaac | |
| 254 # tgcctgggttgctgacagcattgggtacttcatcttttctgaccgcatggatgagccacatccgttatcaaagctggacgactggatagaccacttaa | |
| 255 # tcgatcggggttcctttgtggaatcgaagttcatgactgtcttgaatgatgtagagagagtaatcatgattgagatgtacaaggaggctcgaaaggca | |
| 256 # tatcaaaatgcagaaactcgcaaggaaatggaagctatgggacttccagttgcgtctgctcaagatatgatgctgatagatgcgatgatgcatgttta | |
| 257 # tcggcgactcagcggagatagggttctcaaggacgtgggacacgaagatgatgttggtcattga] | |
| 258 # protein sequence = [MFRARDSLRKLRSQGLPSTKIWLPTPRSQRLLASFAKSRNTFPWHYAVPAAMGAAVFSFVFIAQSQKGSLPYPGGCCS | |
| 259 # RDRKPLLVSYYTDKPCTLRDVTDIAGLMAAMWVSERINEQSSSKDALTVKDDLLFDIASRLALLRNGGVEGSSLGKTECLQMFAESESNRLKDSPFGR | |
| 260 # ESCDLSLMSGDAKTAWVADSIGYFIFSDRMDEPHPLSKLDDWIDHLIDRGSFVESKFMTVLNDVERVIMIEMYKEARKAYQNAETRKEMEAMGLPVAS | |
| 261 # AQDMMLIDAMMHVYRRLSGDRVLKDVGHEDDVGH] | |
| 262 # end gene g8 | |
| 263 ### | |
| 264 # start gene g9 | |
| 265 scaffold14 AUGUSTUS gene 30672 31824 1 + . ID=g9 | |
| 266 scaffold14 AUGUSTUS transcript 30672 31824 1 + . ID=g9.t1;Parent=g9 | |
| 267 scaffold14 AUGUSTUS start_codon 30672 30674 . + 0 Parent=g9.t1 | |
| 268 scaffold14 AUGUSTUS intron 31248 31299 1 + . Parent=g9.t1 | |
| 269 scaffold14 AUGUSTUS CDS 30672 31247 1 + 0 ID=g9.t1.cds;Parent=g9.t1 | |
| 270 scaffold14 AUGUSTUS CDS 31300 31824 1 + 0 ID=g9.t1.cds;Parent=g9.t1 | |
| 271 scaffold14 AUGUSTUS stop_codon 31822 31824 . + 0 Parent=g9.t1 | |
| 272 # coding sequence = [atgccaatcgaaaacatccaaaacccatccgcaaaacactggaactgcacaaacaccctcaacccctccatcctcccct | |
| 273 # tccaccaatctctccccgactacgccataaccccgctcacccccctagaagctctagcagaagacctaggtataggccacatctacgtcaaagacgaa | |
| 274 # ggcacgcgtttcggtctgcccgccttcaaaatcctaggcgcctcatgggcggtttaccgagccatcgcggctcaattgggtaaaccgacgacaacatc | |
| 275 # actggatgatttatgcaatgctgccgaggggaggggaattcgaatcgtcacgacatcagagggaaactggggtcgagcggttgctcgaatggggaggt | |
| 276 # atcttggggttgcggttacggtttatgtccctcggtatatggatgaagcgacacgggggaagatttcaagggaaggcgctgaggttatcctacataaa | |
| 277 # ggcgaatacgacgattgtctatttacttgtcgacacgtctccgaggaaacgggggctcttcttgttttggatacgagttttgatgggtacacggagat | |
| 278 # accgcagtgggtgacggatgggtactcttctatgcttgaagaagtggattcgcaactccgggctgcgattgacagaccggcgacccatgcgattgctt | |
| 279 # ctgttggtgtggggtcgtgggctcatgccgtggtggctcattataaatccaaagatccgactgcagctgttgcgactgttgagcctaagacggcgaat | |
| 280 # tgtcttgctacctctctcgacgccggcaagattatttcagtcaagactgacgtcaccattatgaacggcatgaattgcggaactgtgtctgacattgc | |
| 281 # atggccgtatctgagagatggtgtcgatgcaagtgttaccgtcagtgagatgcaggcacacgaagccgttctgtatctgagagcgcatggcgtgaatg | |
| 282 # ctggaccttgtggagcggcaccactcgccgcattgagggagttgaagaagttgaactggcttgggcttgggtcggatagcgtcgtggtactttattgc | |
| 283 # acagaggccgcaagagcgtataaggagcctaccagcgagtaa] | |
| 284 # protein sequence = [MPIENIQNPSAKHWNCTNTLNPSILPFHQSLPDYAITPLTPLEALAEDLGIGHIYVKDEGTRFGLPAFKILGASWAVY | |
| 285 # RAIAAQLGKPTTTSLDDLCNAAEGRGIRIVTTSEGNWGRAVARMGRYLGVAVTVYVPRYMDEATRGKISREGAEVILHKGEYDDCLFTCRHVSEETGA | |
| 286 # LLVLDTSFDGYTEIPQWVTDGYSSMLEEVDSQLRAAIDRPATHAIASVGVGSWAHAVVAHYKSKDPTAAVATVEPKTANCLATSLDAGKIISVKTDVT | |
| 287 # IMNGMNCGTVSDIAWPYLRDGVDASVTVSEMQAHEAVLYLRAHGVNAGPCGAAPLAALRELKKLNWLGLGSDSVVVLYCTEAARAYKEPTSE] | |
| 288 # end gene g9 | |
| 289 ### | |
| 290 # start gene g10 | |
| 291 scaffold14 AUGUSTUS gene 31923 33129 . - . ID=g10 | |
| 292 scaffold14 AUGUSTUS transcript 31923 33129 0.76 - . ID=g10.t1;Parent=g10 | |
| 293 scaffold14 AUGUSTUS stop_codon 31923 31925 . - 0 Parent=g10.t1 | |
| 294 scaffold14 AUGUSTUS intron 32358 32419 1 - . Parent=g10.t1 | |
| 295 scaffold14 AUGUSTUS intron 32848 32915 0.99 - . Parent=g10.t1 | |
| 296 scaffold14 AUGUSTUS CDS 31923 32357 1 - 0 ID=g10.t1.cds;Parent=g10.t1 | |
| 297 scaffold14 AUGUSTUS CDS 32420 32847 0.94 - 2 ID=g10.t1.cds;Parent=g10.t1 | |
| 298 scaffold14 AUGUSTUS CDS 32916 33129 0.82 - 0 ID=g10.t1.cds;Parent=g10.t1 | |
| 299 scaffold14 AUGUSTUS start_codon 33127 33129 . - 0 Parent=g10.t1 | |
| 300 # coding sequence = [atgtctcaccatgagtcgtacgactcgcacaagatgccaaatatgcatgtgcaacagggtcccgatatggccatgaccg | |
| 301 # atgctttgcgtaaacaccttacgcgccacattctatcaccgggacctgtcacgcagcgacggttggattttgagcatgcacgaccgacgtggctgagg | |
| 302 # gagatgtttgcagaagccactggtgtctttttctacgtatatcccgggatcgcagcaacagcagctttcatcttgcaaaaagagagccctgctttggg | |
| 303 # atccgttttcacgatagggctggcttatggtataggcgtttcccttgggattatttgttgcgcaggtacatcggggggacatttcaatccatccatca | |
| 304 # ccatctgcttcgccatttggcaaggatttccgtggagaaaggtgccctactacattttcgcgcagatagctggcgccttcttcgccggcttgattctg | |
| 305 # tacgggcagtaccatcagcaaatcgaggtttatagattgggactggagaagttggggatgcctgaggtttttatggggagtccggccagtatttttac | |
| 306 # gtcatatccgctggggagtcagacgaatcaggcatggttggttttgattgagttttttgttgatgcgtttcttggcttcgccatctgggccgtcctcg | |
| 307 # atccatctaatcccttcatctcagctggcatcgcaccattcgtcatcggtctcgcctacagtctcatgatatggggttttgcaagcgtaaccatcagt | |
| 308 # accaatcttgcccgagatctaggcgggcgccttgtagccatgttgttttacggttccgatgccttcacgtacatgtcatattggtggattggcatctt | |
| 309 # catcaatatacctgccacgatttttgcgacgtgcttttacgagttggtgtttcgggatagtttggataagattgcgcttggacatgcgcagcatgagg | |
| 310 # atggagtggatgggattgcgagacatttgagtcagacggggttgatggatccgtatccagaggagagctcgttgaggaggaaggagtatgcgagtcag | |
| 311 # tcttcgaggatatcttga] | |
| 312 # protein sequence = [MSHHESYDSHKMPNMHVQQGPDMAMTDALRKHLTRHILSPGPVTQRRLDFEHARPTWLREMFAEATGVFFYVYPGIAA | |
| 313 # TAAFILQKESPALGSVFTIGLAYGIGVSLGIICCAGTSGGHFNPSITICFAIWQGFPWRKVPYYIFAQIAGAFFAGLILYGQYHQQIEVYRLGLEKLG | |
| 314 # MPEVFMGSPASIFTSYPLGSQTNQAWLVLIEFFVDAFLGFAIWAVLDPSNPFISAGIAPFVIGLAYSLMIWGFASVTISTNLARDLGGRLVAMLFYGS | |
| 315 # DAFTYMSYWWIGIFINIPATIFATCFYELVFRDSLDKIALGHAQHEDGVDGIARHLSQTGLMDPYPEESSLRRKEYASQSSRIS] | |
| 316 scaffold14 AUGUSTUS transcript 31923 33087 0.11 - . ID=g10.t2;Parent=g10 | |
| 317 scaffold14 AUGUSTUS stop_codon 31923 31925 . - 0 Parent=g10.t2 | |
| 318 scaffold14 AUGUSTUS intron 32358 32419 1 - . Parent=g10.t2 | |
| 319 scaffold14 AUGUSTUS intron 32848 32915 0.99 - . Parent=g10.t2 | |
| 320 scaffold14 AUGUSTUS CDS 31923 32357 1 - 0 ID=g10.t2.cds;Parent=g10.t2 | |
| 321 scaffold14 AUGUSTUS CDS 32420 32847 0.94 - 2 ID=g10.t2.cds;Parent=g10.t2 | |
| 322 scaffold14 AUGUSTUS CDS 32916 33087 0.11 - 0 ID=g10.t2.cds;Parent=g10.t2 | |
| 323 scaffold14 AUGUSTUS start_codon 33085 33087 . - 0 Parent=g10.t2 | |
| 324 # coding sequence = [atgcatgtgcaacagggtcccgatatggccatgaccgatgctttgcgtaaacaccttacgcgccacattctatcaccgg | |
| 325 # gacctgtcacgcagcgacggttggattttgagcatgcacgaccgacgtggctgagggagatgtttgcagaagccactggtgtctttttctacgtatat | |
| 326 # cccgggatcgcagcaacagcagctttcatcttgcaaaaagagagccctgctttgggatccgttttcacgatagggctggcttatggtataggcgtttc | |
| 327 # ccttgggattatttgttgcgcaggtacatcggggggacatttcaatccatccatcaccatctgcttcgccatttggcaaggatttccgtggagaaagg | |
| 328 # tgccctactacattttcgcgcagatagctggcgccttcttcgccggcttgattctgtacgggcagtaccatcagcaaatcgaggtttatagattggga | |
| 329 # ctggagaagttggggatgcctgaggtttttatggggagtccggccagtatttttacgtcatatccgctggggagtcagacgaatcaggcatggttggt | |
| 330 # tttgattgagttttttgttgatgcgtttcttggcttcgccatctgggccgtcctcgatccatctaatcccttcatctcagctggcatcgcaccattcg | |
| 331 # tcatcggtctcgcctacagtctcatgatatggggttttgcaagcgtaaccatcagtaccaatcttgcccgagatctaggcgggcgccttgtagccatg | |
| 332 # ttgttttacggttccgatgccttcacgtacatgtcatattggtggattggcatcttcatcaatatacctgccacgatttttgcgacgtgcttttacga | |
| 333 # gttggtgtttcgggatagtttggataagattgcgcttggacatgcgcagcatgaggatggagtggatgggattgcgagacatttgagtcagacggggt | |
| 334 # tgatggatccgtatccagaggagagctcgttgaggaggaaggagtatgcgagtcagtcttcgaggatatcttga] | |
| 335 # protein sequence = [MHVQQGPDMAMTDALRKHLTRHILSPGPVTQRRLDFEHARPTWLREMFAEATGVFFYVYPGIAATAAFILQKESPALG | |
| 336 # SVFTIGLAYGIGVSLGIICCAGTSGGHFNPSITICFAIWQGFPWRKVPYYIFAQIAGAFFAGLILYGQYHQQIEVYRLGLEKLGMPEVFMGSPASIFT | |
| 337 # SYPLGSQTNQAWLVLIEFFVDAFLGFAIWAVLDPSNPFISAGIAPFVIGLAYSLMIWGFASVTISTNLARDLGGRLVAMLFYGSDAFTYMSYWWIGIF | |
| 338 # INIPATIFATCFYELVFRDSLDKIALGHAQHEDGVDGIARHLSQTGLMDPYPEESSLRRKEYASQSSRIS] | |
| 339 # end gene g10 | |
| 340 ### | |
| 341 # start gene g11 | |
| 342 scaffold14 AUGUSTUS gene 34994 38214 . - . ID=g11 | |
| 343 scaffold14 AUGUSTUS transcript 34994 38214 0.35 - . ID=g11.t1;Parent=g11 | |
| 344 scaffold14 AUGUSTUS stop_codon 34994 34996 . - 0 Parent=g11.t1 | |
| 345 scaffold14 AUGUSTUS intron 35009 35061 1 - . Parent=g11.t1 | |
| 346 scaffold14 AUGUSTUS intron 35522 35657 0.87 - . Parent=g11.t1 | |
| 347 scaffold14 AUGUSTUS intron 35799 35851 1 - . Parent=g11.t1 | |
| 348 scaffold14 AUGUSTUS intron 36061 36125 1 - . Parent=g11.t1 | |
| 349 scaffold14 AUGUSTUS intron 36290 36340 1 - . Parent=g11.t1 | |
| 350 scaffold14 AUGUSTUS intron 36978 37202 0.99 - . Parent=g11.t1 | |
| 351 scaffold14 AUGUSTUS intron 37920 37965 0.89 - . Parent=g11.t1 | |
| 352 scaffold14 AUGUSTUS intron 38139 38192 0.47 - . Parent=g11.t1 | |
| 353 scaffold14 AUGUSTUS CDS 34994 35008 1 - 0 ID=g11.t1.cds;Parent=g11.t1 | |
| 354 scaffold14 AUGUSTUS CDS 35062 35521 1 - 1 ID=g11.t1.cds;Parent=g11.t1 | |
| 355 scaffold14 AUGUSTUS CDS 35658 35798 0.87 - 1 ID=g11.t1.cds;Parent=g11.t1 | |
| 356 scaffold14 AUGUSTUS CDS 35852 36060 1 - 0 ID=g11.t1.cds;Parent=g11.t1 | |
| 357 scaffold14 AUGUSTUS CDS 36126 36289 1 - 2 ID=g11.t1.cds;Parent=g11.t1 | |
| 358 scaffold14 AUGUSTUS CDS 36341 36977 0.88 - 0 ID=g11.t1.cds;Parent=g11.t1 | |
| 359 scaffold14 AUGUSTUS CDS 37203 37919 0.89 - 0 ID=g11.t1.cds;Parent=g11.t1 | |
| 360 scaffold14 AUGUSTUS CDS 37966 38138 0.43 - 2 ID=g11.t1.cds;Parent=g11.t1 | |
| 361 scaffold14 AUGUSTUS CDS 38193 38214 0.96 - 0 ID=g11.t1.cds;Parent=g11.t1 | |
| 362 scaffold14 AUGUSTUS start_codon 38212 38214 . - 0 Parent=g11.t1 | |
| 363 # coding sequence = [atgtctagatactctcgcattgttaacatagacttggtcataggagagagcggccgctacgatgaagacgctcctaacc | |
| 364 # gctacagtcggcctgatgcggtgccgcttcaacatattcccagtcatgaggactttgctacggatggacaacattcctacatggatacccgggatcga | |
| 365 # ctcgccgcccagccgacctactccgttgataatctagcttactcttatggacttagagaagcatacgagtcaacattccagaacatcccagagcatcc | |
| 366 # gggccgccagcattatgattcacatccagctgaagaagcagatccagcgtattatgacgatgatgataccagaccaatgctagatcgtcaccacagta | |
| 367 # acgatgccagtagttcttcggtgacactgacagtgcaggtcccgagatgggccaccatccagtatgtcccattgttcaaaggcaacctggttttggac | |
| 368 # tgtccagtcccatcaaaattggtcaatcagttggcgacaggggatgaacagcctcgtgaatctacgcacatgagatattcagcagcaacttgcgatcc | |
| 369 # cgccgattttcttgacaaccgattcacattgcgccaaaaattatatcaacaaccgagagcagttgaactcttcatcgttgtcacaatgtacaatgaag | |
| 370 # acgatgcgctgctggcgagaacattgatagggattttccagaatgtcaattacatggaaagtttgagggatagcacgatgtggggtgctaacgcctgg | |
| 371 # aagaagatagtagtgtgcatcgttagtgacggaatcgcgaagatcaatccccgttctgcagcacttcttgctggtctgggtgtctttcagcaaggcat | |
| 372 # tgccaaagctaagatcaacaaactcgagaccgaggcccatatattcgagtacacaacgcaaatggaaccagtaatgagaggcgagacagtctccgtcc | |
| 373 # agaagggcaacactccggttcaactgctcttctgcttgaagcaaaagaatgcgcagaagatcaattcgcatcgctggttctttcaagcctttggcaga | |
| 374 # tgtctcgagcctaatatttgtgtactgctcgatgctggaaccaaacctggtaagcactcgatattcaaactttggaacgttttcgatcgaaacagaca | |
| 375 # ttgtgccggcgcttgtggagagatcaaggcagacttaggaagagggggtaaaaacttgttgaatccattggtcgcgactcaaaactttgaatataaga | |
| 376 # tgtcgaatatacttgataagcctctggaatcagctttcggcttcatctcggtccttccaggagccttctctgcttataggtacgaggctcttcaagga | |
| 377 # gaacccatggtcaaatattttgctggagagaaaatgcacaataacagcaatttctttactgcgaatatgtacctggctgaggaccgaattctatgtta | |
| 378 # cgagctggtggcaaagaagggcagcaaatgggttctccaatacgtaaagaactccacaggagaaacagatgttccgacagaagtgcctgacttcatct | |
| 379 # cgcaacgtcggagatggcttaacggtagtctcttcgctgctgtttacaccgtggtccatttctggaaaatctggcaatccggccacgggtttgttcga | |
| 380 # aagtgcatgctgcagatcgaagtagtctaccaggtcattagcatgatctttgcttggttcgccttgggcaacttttacttggtcttcaaaattcttgt | |
| 381 # gggctcgctgggtgatccgactttacttggaaaagcaggtttggtgctatcggtattcttcgagtggtcttatgtcatctgcctcatcgcttgcttca | |
| 382 # ttctcgccttgggcaatacgccgaaaggaacgaagaaggtctatgttggcatgaccatctattgggcaatcgtgatgacttacctcatgtttgccact | |
| 383 # gtctatctcagcgtcaaatctgtccagtcggaaatcaaagatggctttaagattggcgatttgctgacgaataagacctttgcgacacttattctctc | |
| 384 # tatgctttccacctacgtcttgtgtcaaaccctcaaatgtatcggctcatttgctaacaacacaatagggggcactaaaggcgccaacgatgcacctg | |
| 385 # gaggcggttcagtcgcctctggaaaagacggcaaagcaggtgtcgagcttccatccgatccagacgctcaatacaagaaagagctcgaagtcctcgcc | |
| 386 # gaggcacgcaaagaagaagagtcgaaaacaagcgacgaagatgtcaagaaattctactacgcttctgttcgcagctggatcgtgatggcgtggatatt | |
| 387 # cagcaacttgtcgttgatcacccttgtgatgaaagccggttcggtcgggatcattaccaagaccaagacgagtgaggaggaggcgcagcgcaagaact | |
| 388 # ctgacctttacctctacattatcttgtggagtgtagcgggactcagtgcgttcagatttgttggctcggtttggttcttgattcatagaaagtttgct | |
| 389 # gggatctga] | |
| 390 # protein sequence = [MSRYSRIVNIDLVIGESGRYDEDAPNRYSRPDAVPLQHIPSHEDFATDGQHSYMDTRDRLAAQPTYSVDNLAYSYGLR | |
| 391 # EAYESTFQNIPEHPGRQHYDSHPAEEADPAYYDDDDTRPMLDRHHSNDASSSSVTLTVQVPRWATIQYVPLFKGNLVLDCPVPSKLVNQLATGDEQPR | |
| 392 # ESTHMRYSAATCDPADFLDNRFTLRQKLYQQPRAVELFIVVTMYNEDDALLARTLIGIFQNVNYMESLRDSTMWGANAWKKIVVCIVSDGIAKINPRS | |
| 393 # AALLAGLGVFQQGIAKAKINKLETEAHIFEYTTQMEPVMRGETVSVQKGNTPVQLLFCLKQKNAQKINSHRWFFQAFGRCLEPNICVLLDAGTKPGKH | |
| 394 # SIFKLWNVFDRNRHCAGACGEIKADLGRGGKNLLNPLVATQNFEYKMSNILDKPLESAFGFISVLPGAFSAYRYEALQGEPMVKYFAGEKMHNNSNFF | |
| 395 # TANMYLAEDRILCYELVAKKGSKWVLQYVKNSTGETDVPTEVPDFISQRRRWLNGSLFAAVYTVVHFWKIWQSGHGFVRKCMLQIEVVYQVISMIFAW | |
| 396 # FALGNFYLVFKILVGSLGDPTLLGKAGLVLSVFFEWSYVICLIACFILALGNTPKGTKKVYVGMTIYWAIVMTYLMFATVYLSVKSVQSEIKDGFKIG | |
| 397 # DLLTNKTFATLILSMLSTYVLCQTLKCIGSFANNTIGGTKGANDAPGGGSVASGKDGKAGVELPSDPDAQYKKELEVLAEARKEEESKTSDEDVKKFY | |
| 398 # YASVRSWIVMAWIFSNLSLITLVMKAGSVGIITKTKTSEEEAQRKNSDLYLYIILWSVAGLSAFRFVGSVWFLIHRKFAGI] | |
| 399 scaffold14 AUGUSTUS transcript 34994 38214 0.17 - . ID=g11.t2;Parent=g11 | |
| 400 scaffold14 AUGUSTUS stop_codon 34994 34996 . - 0 Parent=g11.t2 | |
| 401 scaffold14 AUGUSTUS intron 35009 35061 1 - . Parent=g11.t2 | |
| 402 scaffold14 AUGUSTUS intron 35522 35657 0.87 - . Parent=g11.t2 | |
| 403 scaffold14 AUGUSTUS intron 35799 35851 1 - . Parent=g11.t2 | |
| 404 scaffold14 AUGUSTUS intron 36061 36125 1 - . Parent=g11.t2 | |
| 405 scaffold14 AUGUSTUS intron 36290 36340 1 - . Parent=g11.t2 | |
| 406 scaffold14 AUGUSTUS intron 36978 37202 0.99 - . Parent=g11.t2 | |
| 407 scaffold14 AUGUSTUS intron 37920 37965 0.89 - . Parent=g11.t2 | |
| 408 scaffold14 AUGUSTUS intron 38118 38192 0.26 - . Parent=g11.t2 | |
| 409 scaffold14 AUGUSTUS CDS 34994 35008 1 - 0 ID=g11.t2.cds;Parent=g11.t2 | |
| 410 scaffold14 AUGUSTUS CDS 35062 35521 1 - 1 ID=g11.t2.cds;Parent=g11.t2 | |
| 411 scaffold14 AUGUSTUS CDS 35658 35798 0.87 - 1 ID=g11.t2.cds;Parent=g11.t2 | |
| 412 scaffold14 AUGUSTUS CDS 35852 36060 1 - 0 ID=g11.t2.cds;Parent=g11.t2 | |
| 413 scaffold14 AUGUSTUS CDS 36126 36289 1 - 2 ID=g11.t2.cds;Parent=g11.t2 | |
| 414 scaffold14 AUGUSTUS CDS 36341 36977 0.88 - 0 ID=g11.t2.cds;Parent=g11.t2 | |
| 415 scaffold14 AUGUSTUS CDS 37203 37919 0.89 - 0 ID=g11.t2.cds;Parent=g11.t2 | |
| 416 scaffold14 AUGUSTUS CDS 37966 38117 0.25 - 2 ID=g11.t2.cds;Parent=g11.t2 | |
| 417 scaffold14 AUGUSTUS CDS 38193 38214 0.96 - 0 ID=g11.t2.cds;Parent=g11.t2 | |
| 418 scaffold14 AUGUSTUS start_codon 38212 38214 . - 0 Parent=g11.t2 | |
| 419 # coding sequence = [atgtctagatactctcgcattggagagagcggccgctacgatgaagacgctcctaaccgctacagtcggcctgatgcgg | |
| 420 # tgccgcttcaacatattcccagtcatgaggactttgctacggatggacaacattcctacatggatacccgggatcgactcgccgcccagccgacctac | |
| 421 # tccgttgataatctagcttactcttatggacttagagaagcatacgagtcaacattccagaacatcccagagcatccgggccgccagcattatgattc | |
| 422 # acatccagctgaagaagcagatccagcgtattatgacgatgatgataccagaccaatgctagatcgtcaccacagtaacgatgccagtagttcttcgg | |
| 423 # tgacactgacagtgcaggtcccgagatgggccaccatccagtatgtcccattgttcaaaggcaacctggttttggactgtccagtcccatcaaaattg | |
| 424 # gtcaatcagttggcgacaggggatgaacagcctcgtgaatctacgcacatgagatattcagcagcaacttgcgatcccgccgattttcttgacaaccg | |
| 425 # attcacattgcgccaaaaattatatcaacaaccgagagcagttgaactcttcatcgttgtcacaatgtacaatgaagacgatgcgctgctggcgagaa | |
| 426 # cattgatagggattttccagaatgtcaattacatggaaagtttgagggatagcacgatgtggggtgctaacgcctggaagaagatagtagtgtgcatc | |
| 427 # gttagtgacggaatcgcgaagatcaatccccgttctgcagcacttcttgctggtctgggtgtctttcagcaaggcattgccaaagctaagatcaacaa | |
| 428 # actcgagaccgaggcccatatattcgagtacacaacgcaaatggaaccagtaatgagaggcgagacagtctccgtccagaagggcaacactccggttc | |
| 429 # aactgctcttctgcttgaagcaaaagaatgcgcagaagatcaattcgcatcgctggttctttcaagcctttggcagatgtctcgagcctaatatttgt | |
| 430 # gtactgctcgatgctggaaccaaacctggtaagcactcgatattcaaactttggaacgttttcgatcgaaacagacattgtgccggcgcttgtggaga | |
| 431 # gatcaaggcagacttaggaagagggggtaaaaacttgttgaatccattggtcgcgactcaaaactttgaatataagatgtcgaatatacttgataagc | |
| 432 # ctctggaatcagctttcggcttcatctcggtccttccaggagccttctctgcttataggtacgaggctcttcaaggagaacccatggtcaaatatttt | |
| 433 # gctggagagaaaatgcacaataacagcaatttctttactgcgaatatgtacctggctgaggaccgaattctatgttacgagctggtggcaaagaaggg | |
| 434 # cagcaaatgggttctccaatacgtaaagaactccacaggagaaacagatgttccgacagaagtgcctgacttcatctcgcaacgtcggagatggctta | |
| 435 # acggtagtctcttcgctgctgtttacaccgtggtccatttctggaaaatctggcaatccggccacgggtttgttcgaaagtgcatgctgcagatcgaa | |
| 436 # gtagtctaccaggtcattagcatgatctttgcttggttcgccttgggcaacttttacttggtcttcaaaattcttgtgggctcgctgggtgatccgac | |
| 437 # tttacttggaaaagcaggtttggtgctatcggtattcttcgagtggtcttatgtcatctgcctcatcgcttgcttcattctcgccttgggcaatacgc | |
| 438 # cgaaaggaacgaagaaggtctatgttggcatgaccatctattgggcaatcgtgatgacttacctcatgtttgccactgtctatctcagcgtcaaatct | |
| 439 # gtccagtcggaaatcaaagatggctttaagattggcgatttgctgacgaataagacctttgcgacacttattctctctatgctttccacctacgtctt | |
| 440 # gtgtcaaaccctcaaatgtatcggctcatttgctaacaacacaatagggggcactaaaggcgccaacgatgcacctggaggcggttcagtcgcctctg | |
| 441 # gaaaagacggcaaagcaggtgtcgagcttccatccgatccagacgctcaatacaagaaagagctcgaagtcctcgccgaggcacgcaaagaagaagag | |
| 442 # tcgaaaacaagcgacgaagatgtcaagaaattctactacgcttctgttcgcagctggatcgtgatggcgtggatattcagcaacttgtcgttgatcac | |
| 443 # ccttgtgatgaaagccggttcggtcgggatcattaccaagaccaagacgagtgaggaggaggcgcagcgcaagaactctgacctttacctctacatta | |
| 444 # tcttgtggagtgtagcgggactcagtgcgttcagatttgttggctcggtttggttcttgattcatagaaagtttgctgggatctga] | |
| 445 # protein sequence = [MSRYSRIGESGRYDEDAPNRYSRPDAVPLQHIPSHEDFATDGQHSYMDTRDRLAAQPTYSVDNLAYSYGLREAYESTF | |
| 446 # QNIPEHPGRQHYDSHPAEEADPAYYDDDDTRPMLDRHHSNDASSSSVTLTVQVPRWATIQYVPLFKGNLVLDCPVPSKLVNQLATGDEQPRESTHMRY | |
| 447 # SAATCDPADFLDNRFTLRQKLYQQPRAVELFIVVTMYNEDDALLARTLIGIFQNVNYMESLRDSTMWGANAWKKIVVCIVSDGIAKINPRSAALLAGL | |
| 448 # GVFQQGIAKAKINKLETEAHIFEYTTQMEPVMRGETVSVQKGNTPVQLLFCLKQKNAQKINSHRWFFQAFGRCLEPNICVLLDAGTKPGKHSIFKLWN | |
| 449 # VFDRNRHCAGACGEIKADLGRGGKNLLNPLVATQNFEYKMSNILDKPLESAFGFISVLPGAFSAYRYEALQGEPMVKYFAGEKMHNNSNFFTANMYLA | |
| 450 # EDRILCYELVAKKGSKWVLQYVKNSTGETDVPTEVPDFISQRRRWLNGSLFAAVYTVVHFWKIWQSGHGFVRKCMLQIEVVYQVISMIFAWFALGNFY | |
| 451 # LVFKILVGSLGDPTLLGKAGLVLSVFFEWSYVICLIACFILALGNTPKGTKKVYVGMTIYWAIVMTYLMFATVYLSVKSVQSEIKDGFKIGDLLTNKT | |
| 452 # FATLILSMLSTYVLCQTLKCIGSFANNTIGGTKGANDAPGGGSVASGKDGKAGVELPSDPDAQYKKELEVLAEARKEEESKTSDEDVKKFYYASVRSW | |
| 453 # IVMAWIFSNLSLITLVMKAGSVGIITKTKTSEEEAQRKNSDLYLYIILWSVAGLSAFRFVGSVWFLIHRKFAGI] |