Mercurial > repos > iracooke > protk_proteogenomics
comparison test-data/PeptideShaker_tiny.mzid @ 0:956bfab63005 draft default tip
planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
| author | iracooke |
|---|---|
| date | Tue, 20 Oct 2015 20:36:03 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:956bfab63005 |
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| 1 <?xml version="1.0" encoding="utf-8"?> | |
| 2 <MzIdentML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | |
| 3 xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" | |
| 4 id="PeptideShaker v0.38.2" | |
| 5 xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" | |
| 6 version="1.1.0" creationDate="2015-05-07T01:24:08"> | |
| 7 <cvList> | |
| 8 <cv id="PSI-MS" | |
| 9 uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" | |
| 10 version="3.73.0" fullName="PSI-MS" /> | |
| 11 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" | |
| 12 fullName="UNIMOD" /> | |
| 13 <cv id="UO" | |
| 14 uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" | |
| 15 fullName="UNIT-ONTOLOGY" /> | |
| 16 <cv id="PRIDE" | |
| 17 uri="http://code.google.com/p/ebi-pride/source/browse/trunk/pride-core/schema/pride_cv.obo" | |
| 18 fullName="PRIDE" /> | |
| 19 </cvList> | |
| 20 <AnalysisSoftwareList> | |
| 21 <AnalysisSoftware name="PeptideShaker" version="0.38.2" | |
| 22 id="ID_software" uri="http://peptide-shaker.googlecode.com"> | |
| 23 <ContactRole contact_ref="PS_DEV"> | |
| 24 <Role> | |
| 25 <cvParam cvRef="PSI-MS" accession="MS:1001267" | |
| 26 name="software vendor" value="CompOmics" /> | |
| 27 </Role> | |
| 28 </ContactRole> | |
| 29 <SoftwareName> | |
| 30 <cvParam cvRef="PSI-MS" accession="MS:1002458" | |
| 31 name="PeptideShaker" /> | |
| 32 </SoftwareName> | |
| 33 <Customizations>No customisations</Customizations> | |
| 34 </AnalysisSoftware> | |
| 35 </AnalysisSoftwareList> | |
| 36 <Provider id="PROVIDER"> | |
| 37 <ContactRole contact_ref="PROVIDER"> | |
| 38 <Role> | |
| 39 <cvParam cvRef="PSI-MS" accession="MS:1001271" | |
| 40 name="researcher" /> | |
| 41 </Role> | |
| 42 </ContactRole> | |
| 43 </Provider> | |
| 44 <AuditCollection> | |
| 45 <Person firstName="Proteomics" lastName="Galaxy" id="PROVIDER"> | |
| 46 <cvParam cvRef="PSI-MS" accession="MS:1000587" | |
| 47 name="contact address" value="galaxyp@umn.edu" /> | |
| 48 <cvParam cvRef="PSI-MS" accession="MS:1000589" | |
| 49 name="contact email" value="galaxyp@umn.edu" /> | |
| 50 <Affiliation organization_ref="ORG_DOC_OWNER" /> | |
| 51 </Person> | |
| 52 <Organization name="University of Minnesota" | |
| 53 id="ORG_DOC_OWNER"> | |
| 54 <cvParam cvRef="PSI-MS" accession="MS:1000586" | |
| 55 name="contact name" value="University of Minnesota" /> | |
| 56 <cvParam cvRef="PSI-MS" accession="MS:1000587" | |
| 57 name="contact address" | |
| 58 value="Minneapolis, MN 55455, Vereinigte Staaten" /> | |
| 59 <cvParam cvRef="PSI-MS" accession="MS:1000589" | |
| 60 name="contact email" value="galaxyp@umn.edu" /> | |
| 61 </Organization> | |
| 62 <Organization name="PeptideShaker developers" id="PS_DEV"> | |
| 63 <cvParam cvRef="PSI-MS" accession="MS:1000586" | |
| 64 name="contact name" value="PeptideShaker developers" /> | |
| 65 <cvParam cvRef="PSI-MS" accession="MS:1000587" | |
| 66 name="contact address" | |
| 67 value="Proteomics Unit, Building for Basic Biology, University of Bergen, Jonas Liesvei 91, N-5009 Bergen, Norway" /> | |
| 68 <cvParam cvRef="PSI-MS" accession="MS:1000588" | |
| 69 name="contact url" | |
| 70 value="http://peptide-shaker.googlecode.com" /> | |
| 71 <cvParam cvRef="PSI-MS" accession="MS:1000589" | |
| 72 name="contact email" | |
| 73 value="peptide-shaker@googlegroups.com" /> | |
| 74 </Organization> | |
| 75 </AuditCollection> | |
| 76 <SequenceCollection> | |
| 77 <DBSequence id="JEMP01000193.1_rev_g3500.t1" | |
| 78 accession="JEMP01000193.1_rev_g3500.t1" | |
| 79 searchDatabase_ref="SearchDB_1"> | |
| 80 <cvParam cvRef="PSI-MS" accession="MS:1001088" | |
| 81 name="protein description" value="280755|283436" /> | |
| 82 </DBSequence> | |
| 83 <DBSequence id="JEMP01000061.1_rev_g10170.t1" | |
| 84 accession="JEMP01000061.1_rev_g10170.t1" | |
| 85 searchDatabase_ref="SearchDB_1"> | |
| 86 <cvParam cvRef="PSI-MS" accession="MS:1001088" | |
| 87 name="protein description" value="36066|38753" /> | |
| 88 </DBSequence> | |
| 89 <Peptide id="KSPVYKVHFTR"> | |
| 90 <PeptideSequence>KSPVYKVHFTR</PeptideSequence> | |
| 91 </Peptide> | |
| 92 <Peptide id="SKIPFIVIFDPIEAAR"> | |
| 93 <PeptideSequence>SQIPFLVLFDPIEAAR</PeptideSequence> | |
| 94 </Peptide> | |
| 95 <Peptide id="SSGNWINIFNPATPSFR"> | |
| 96 <PeptideSequence>SSGNWLNLFNPATPSFR</PeptideSequence> | |
| 97 </Peptide> | |
| 98 <Peptide id="GGIDSWNAIGYIPVKDFDYK"> | |
| 99 <PeptideSequence>GGIDSWNALGYIPVQDFDYK</PeptideSequence> | |
| 100 </Peptide> | |
| 101 <Peptide id="GKSGNPMIMIDITDISDSR"> | |
| 102 <PeptideSequence>GQSGNPMLMLDLTDLSDSR</PeptideSequence> | |
| 103 </Peptide> | |
| 104 <Peptide id="TIEYSYNDFCISEMAAGIGGR"> | |
| 105 <PeptideSequence>TLEYSYNDFCISEMAAGLGGR</PeptideSequence> | |
| 106 <Modification monoisotopicMassDelta="57.021464" residues="C" | |
| 107 location="10"> | |
| 108 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" | |
| 109 name="Carbamidomethyl" value="57.021464" /> | |
| 110 </Modification> | |
| 111 </Peptide> | |
| 112 <Peptide id="TAIFNFRFPK"> | |
| 113 <PeptideSequence>TALFNFRFPK</PeptideSequence> | |
| 114 </Peptide> | |
| 115 <Peptide id="NWIGHEFFIK"> | |
| 116 <PeptideSequence>NWIGHEFFLK</PeptideSequence> | |
| 117 </Peptide> | |
| 118 <Peptide id="TWGFKDPIGCSKIDEK"> | |
| 119 <PeptideSequence>TWGFQDPLGCSQIDEK</PeptideSequence> | |
| 120 <Modification monoisotopicMassDelta="57.021464" residues="C" | |
| 121 location="10"> | |
| 122 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" | |
| 123 name="Carbamidomethyl" value="57.021464" /> | |
| 124 </Modification> | |
| 125 </Peptide> | |
| 126 <Peptide id="DGHVFAGASIPYGIAK"> | |
| 127 <PeptideSequence>DGHVFAGASLPYGLAK</PeptideSequence> | |
| 128 </Peptide> | |
| 129 <Peptide id="SIIDTYKHEGWIPDCR"> | |
| 130 <PeptideSequence>SLIDTYKHEGWLPDCR</PeptideSequence> | |
| 131 <Modification monoisotopicMassDelta="57.021464" residues="C" | |
| 132 location="15"> | |
| 133 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" | |
| 134 name="Carbamidomethyl" value="57.021464" /> | |
| 135 </Modification> | |
| 136 </Peptide> | |
| 137 <Peptide id="DATVEPFDWCCKGR"> | |
| 138 <PeptideSequence>DATVEPFDWCCQGR</PeptideSequence> | |
| 139 <Modification monoisotopicMassDelta="57.021464" residues="C" | |
| 140 location="10"> | |
| 141 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" | |
| 142 name="Carbamidomethyl" value="57.021464" /> | |
| 143 </Modification> | |
| 144 <Modification monoisotopicMassDelta="57.021464" residues="C" | |
| 145 location="11"> | |
| 146 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" | |
| 147 name="Carbamidomethyl" value="57.021464" /> | |
| 148 </Modification> | |
| 149 </Peptide> | |
| 150 <Peptide id="IVNNIAVEMTTAR"> | |
| 151 <PeptideSequence>LVNNIAVEMTTAR</PeptideSequence> | |
| 152 </Peptide> | |
| 153 <Peptide id="IYDTGIFANSR"> | |
| 154 <PeptideSequence>IYDTGIFANSR</PeptideSequence> | |
| 155 </Peptide> | |
| 156 <Peptide id="SINGYPIPGGGTVR"> | |
| 157 <PeptideSequence>SINGYPLPGGGTVR</PeptideSequence> | |
| 158 </Peptide> | |
| 159 <Peptide id="FEPPAKETDPITAR"> | |
| 160 <PeptideSequence>FEPPAKETDPITAR</PeptideSequence> | |
| 161 </Peptide> | |
| 162 <Peptide id="ENIDWNEGYK"> | |
| 163 <PeptideSequence>ENIDWNEGYK</PeptideSequence> | |
| 164 </Peptide> | |
| 165 <Peptide id="RAHYYVPR"> | |
| 166 <PeptideSequence>RAHYYVPR</PeptideSequence> | |
| 167 </Peptide> | |
| 168 <PeptideEvidence isDecoy="false" pre="K" post="G" start="712" | |
| 169 end="722" peptide_ref="KSPVYKVHFTR" | |
| 170 dBSequence_ref="JEMP01000193.1_rev_g3500.t1" id="PepEv_1" /> | |
| 171 <PeptideEvidence isDecoy="false" pre="R" post="E" start="552" | |
| 172 end="568" peptide_ref="SSGNWINIFNPATPSFR" | |
| 173 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_232" /> | |
| 174 <PeptideEvidence isDecoy="false" pre="R" post="G" start="491" | |
| 175 end="510" peptide_ref="GGIDSWNAIGYIPVKDFDYK" | |
| 176 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_266" /> | |
| 177 <PeptideEvidence isDecoy="false" pre="K" post="Q" start="192" | |
| 178 end="210" peptide_ref="GKSGNPMIMIDITDISDSR" | |
| 179 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_532" /> | |
| 180 <PeptideEvidence isDecoy="false" pre="R" post="Q" start="522" | |
| 181 end="542" peptide_ref="TIEYSYNDFCISEMAAGIGGR" | |
| 182 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_663" /> | |
| 183 <PeptideEvidence isDecoy="false" pre="R" post="G" start="182" | |
| 184 end="191" peptide_ref="TAIFNFRFPK" | |
| 185 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_963" /> | |
| 186 <PeptideEvidence isDecoy="false" pre="K" post="G" start="783" | |
| 187 end="792" peptide_ref="NWIGHEFFIK" | |
| 188 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 189 id="PepEv_1108" /> | |
| 190 <PeptideEvidence isDecoy="false" pre="R" post="G" start="591" | |
| 191 end="606" peptide_ref="TWGFKDPIGCSKIDEK" | |
| 192 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 193 id="PepEv_1474" /> | |
| 194 <PeptideEvidence isDecoy="false" pre="K" post="A" start="67" | |
| 195 end="82" peptide_ref="DGHVFAGASIPYGIAK" | |
| 196 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 197 id="PepEv_1796" /> | |
| 198 <PeptideEvidence isDecoy="false" pre="R" post="M" start="420" | |
| 199 end="435" peptide_ref="SIIDTYKHEGWIPDCR" | |
| 200 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 201 id="PepEv_1829" /> | |
| 202 <PeptideEvidence isDecoy="false" pre="K" post="G" start="477" | |
| 203 end="490" peptide_ref="DATVEPFDWCCKGR" | |
| 204 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 205 id="PepEv_1958" /> | |
| 206 <PeptideEvidence isDecoy="false" pre="K" post="R" start="168" | |
| 207 end="180" peptide_ref="IVNNIAVEMTTAR" | |
| 208 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 209 id="PepEv_2003" /> | |
| 210 <PeptideEvidence isDecoy="false" pre="K" post="A" start="253" | |
| 211 end="263" peptide_ref="IYDTGIFANSR" | |
| 212 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 213 id="PepEv_2093" /> | |
| 214 <PeptideEvidence isDecoy="false" pre="R" post="F" start="276" | |
| 215 end="289" peptide_ref="SINGYPIPGGGTVR" | |
| 216 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 217 id="PepEv_2130" /> | |
| 218 <PeptideEvidence isDecoy="false" pre="R" post="V" start="290" | |
| 219 end="303" peptide_ref="FEPPAKETDPITAR" | |
| 220 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 221 id="PepEv_2202" /> | |
| 222 <PeptideEvidence isDecoy="false" pre="K" post="A" start="463" | |
| 223 end="472" peptide_ref="ENIDWNEGYK" | |
| 224 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 225 id="PepEv_2204" /> | |
| 226 <PeptideEvidence isDecoy="false" pre="K" post="E" start="688" | |
| 227 end="695" peptide_ref="RAHYYVPR" | |
| 228 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 229 id="PepEv_2444" /> | |
| 230 <PeptideEvidence isDecoy="false" pre="R" post="M" start="401" | |
| 231 end="416" peptide_ref="SKIPFIVIFDPIEAAR" | |
| 232 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" | |
| 233 id="PepEv_3117" /> | |
| 234 </SequenceCollection> | |
| 235 <AnalysisCollection> | |
| 236 <SpectrumIdentification spectrumIdentificationList_ref="SIL_1" | |
| 237 spectrumIdentificationProtocol_ref="SearchProtocol_1" | |
| 238 id="SpecIdent_1"> | |
| 239 <InputSpectra spectraData_ref="ma201_Vp_1-10.mzML.mgf" /> | |
| 240 <InputSpectra spectraData_ref="ma201_Vp_11-20.mzML.mgf" /> | |
| 241 <SearchDatabaseRef searchDatabase_ref="SearchDB_1" /> | |
| 242 </SpectrumIdentification> | |
| 243 <ProteinDetection proteinDetectionProtocol_ref="PeptideShaker_1" | |
| 244 proteinDetectionList_ref="Protein_groups" id="PD_1"> | |
| 245 <InputSpectrumIdentifications spectrumIdentificationList_ref="SIL_1" /> | |
| 246 </ProteinDetection> | |
| 247 </AnalysisCollection> | |
| 248 <AnalysisProtocolCollection> | |
| 249 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" | |
| 250 id="SearchProtocol_1"> | |
| 251 <SearchType> | |
| 252 <cvParam cvRef="PSI-MS" accession="MS:1001083" | |
| 253 name="ms-ms search" /> | |
| 254 </SearchType> | |
| 255 <AdditionalSearchParams> | |
| 256 <cvParam cvRef="PSI-MS" accession="MS:1001211" | |
| 257 name="parent mass type mono" /> | |
| 258 <cvParam cvRef="PSI-MS" accession="MS:1001256" | |
| 259 name="fragment mass type mono" /> | |
| 260 </AdditionalSearchParams> | |
| 261 <ModificationParams> | |
| 262 <SearchModification residues="C" massDelta="57.021464" | |
| 263 fixedMod="true"> | |
| 264 <cvParam cvRef="PSI-MS" accession="MS:1001460" | |
| 265 name="unknown modification" /> | |
| 266 <cvParam cvRef="PSI-MS" accession="MS:1002504" | |
| 267 name="modification index" value="0" /> | |
| 268 </SearchModification> | |
| 269 <SearchModification residues="M" massDelta="15.994915" | |
| 270 fixedMod="false"> | |
| 271 <cvParam cvRef="PSI-MS" accession="MS:1001460" | |
| 272 name="unknown modification" /> | |
| 273 <cvParam cvRef="PSI-MS" accession="MS:1002504" | |
| 274 name="modification index" value="1" /> | |
| 275 </SearchModification> | |
| 276 </ModificationParams> | |
| 277 <Enzymes independent="false"> | |
| 278 <Enzyme missedCleavages="2" semiSpecific="false" id="Enz1" | |
| 279 name="Trypsin"> | |
| 280 <EnzymeName> | |
| 281 <cvParam cvRef="PSI-MS" accession="MS:1001251" | |
| 282 name="Trypsin" /> | |
| 283 </EnzymeName> | |
| 284 </Enzyme> | |
| 285 </Enzymes> | |
| 286 <FragmentTolerance> | |
| 287 <cvParam accession="MS:1001412" cvRef="PSI-MS" | |
| 288 unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221" | |
| 289 value="0.2" name="search tolerance plus value" /> | |
| 290 <cvParam accession="MS:1001413" cvRef="PSI-MS" | |
| 291 unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221" | |
| 292 value="0.2" name="search tolerance minus value" /> | |
| 293 </FragmentTolerance> | |
| 294 <ParentTolerance> | |
| 295 <cvParam accession="MS:1001412" cvRef="PSI-MS" | |
| 296 unitCvRef="UO" unitName="parts per million" | |
| 297 unitAccession="UO:0000169" value="50.0" | |
| 298 name="search tolerance plus value" /> | |
| 299 <cvParam accession="MS:1001413" cvRef="PSI-MS" | |
| 300 unitCvRef="UO" unitName="parts per million" | |
| 301 unitAccession="UO:0000169" value="50.0" | |
| 302 name="search tolerance minus value" /> | |
| 303 </ParentTolerance> | |
| 304 <Threshold> | |
| 305 <cvParam cvRef="PSI-MS" accession="MS:1001364" | |
| 306 name="distinct peptide-level global FDR" value="1.0" /> | |
| 307 <cvParam cvRef="PSI-MS" accession="MS:1002350" | |
| 308 name="PSM-level global FDR" value="1.0" /> | |
| 309 <cvParam cvRef="PSI-MS" accession="MS:1002557" | |
| 310 name="D-score threshold" value="95.0" /> | |
| 311 </Threshold> | |
| 312 </SpectrumIdentificationProtocol> | |
| 313 <ProteinDetectionProtocol analysisSoftware_ref="ID_software" | |
| 314 id="PeptideShaker_1"> | |
| 315 <Threshold> | |
| 316 <cvParam cvRef="PSI-MS" accession="MS:1002369" | |
| 317 name="protein group-level global FDR" value="0.01" /> | |
| 318 </Threshold> | |
| 319 </ProteinDetectionProtocol> | |
| 320 </AnalysisProtocolCollection> | |
| 321 <DataCollection> | |
| 322 <Inputs> | |
| 323 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_1-10.mzML.comet.pep.xml" | |
| 324 id="SourceFile_1"> | |
| 325 <FileFormat> | |
| 326 <cvParam cvRef="PSI-MS" accession="MS:1001421" | |
| 327 name="pepXML format" /> | |
| 328 </FileFormat> | |
| 329 </SourceFile> | |
| 330 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_1-10.mzML.msgf.mzid" | |
| 331 id="SourceFile_2"> | |
| 332 <FileFormat> | |
| 333 <cvParam cvRef="PSI-MS" accession="MS:1002073" | |
| 334 name="mzIdentML format" /> | |
| 335 </FileFormat> | |
| 336 </SourceFile> | |
| 337 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_11-20.mzML.comet.pep.xml" | |
| 338 id="SourceFile_3"> | |
| 339 <FileFormat> | |
| 340 <cvParam cvRef="PSI-MS" accession="MS:1001421" | |
| 341 name="pepXML format" /> | |
| 342 </FileFormat> | |
| 343 </SourceFile> | |
| 344 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_11-20.mzML.msgf.mzid" | |
| 345 id="SourceFile_4"> | |
| 346 <FileFormat> | |
| 347 <cvParam cvRef="PSI-MS" accession="MS:1002073" | |
| 348 name="mzIdentML format" /> | |
| 349 </FileFormat> | |
| 350 </SourceFile> | |
| 351 <SearchDatabase numDatabaseSequences="23866" | |
| 352 location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/input_database.fasta" | |
| 353 id="SearchDB_1"> | |
| 354 <FileFormat> | |
| 355 <cvParam cvRef="PSI-MS" accession="MS:1001348" | |
| 356 name="FASTA format" /> | |
| 357 </FileFormat> | |
| 358 <DatabaseName> | |
| 359 <userParam name="input_database.fasta" /> | |
| 360 </DatabaseName> | |
| 361 <cvParam cvRef="PSI-MS" accession="MS:1001073" | |
| 362 name="database type amino acid" /> | |
| 363 </SearchDatabase> | |
| 364 <SpectraData location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/ma201_Vp_1-10.mzML.mgf" | |
| 365 id="ma201_Vp_1-10.mzML.mgf" name="ma201_Vp_1-10.mzML.mgf"> | |
| 366 <FileFormat> | |
| 367 <cvParam cvRef="PSI-MS" accession="MS:1001062" | |
| 368 name="Mascot MGF file" /> | |
| 369 </FileFormat> | |
| 370 <SpectrumIDFormat> | |
| 371 <cvParam cvRef="PSI-MS" accession="MS:1000774" | |
| 372 name="multiple peak list nativeID format" /> | |
| 373 </SpectrumIDFormat> | |
| 374 </SpectraData> | |
| 375 <SpectraData location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/ma201_Vp_11-20.mzML.mgf" | |
| 376 id="ma201_Vp_11-20.mzML.mgf" name="ma201_Vp_11-20.mzML.mgf"> | |
| 377 <FileFormat> | |
| 378 <cvParam cvRef="PSI-MS" accession="MS:1001062" | |
| 379 name="Mascot MGF file" /> | |
| 380 </FileFormat> | |
| 381 <SpectrumIDFormat> | |
| 382 <cvParam cvRef="PSI-MS" accession="MS:1000774" | |
| 383 name="multiple peak list nativeID format" /> | |
| 384 </SpectrumIDFormat> | |
| 385 </SpectraData> | |
| 386 </Inputs> | |
| 387 <AnalysisData> | |
| 388 <SpectrumIdentificationList id="SIL_1"> | |
| 389 <FragmentationTable> | |
| 390 <Measure id="Measure_MZ"> | |
| 391 <cvParam unitCvRef="PSI-MS" accession="MS:1001225" | |
| 392 cvRef="PSI-MS" unitName="m/z" | |
| 393 unitAccession="MS:1000040" name="product ion m/z" /> | |
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