Mercurial > repos > iracooke > protk_omssa
view tool_dependencies.xml @ 1:b386c6c95d0e default tip
Fix
author | Ira Cooke <iracooke@gmail.com> |
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date | Thu, 06 Jun 2013 15:35:19 +1000 |
parents | 54c473cc31bf |
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<?xml version="1.0"?> <tool_dependency> <package name="galaxy_protk" version="1.2.2"> <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="32c643142290" prior_installation_required="True"/> </package> <package name="omssa" version="2.1.9"> <install version="1.0"> <actions> <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action> <action type="shell_command">sh install_omssa.sh $INSTALL_DIR 1.2.2</action> <action type="move_file"> <source>install_omssa.sh</source> <destination>$INSTALL_DIR</destination> </action> <action type="set_environment"> <environment_variable name="PROTK_OMSSA_ROOT" action="set_to">$INSTALL_DIR</environment_variable> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> Installs OMSSA via the protk installer By default OMSSA will run with as many threads as are available. You can limit the number of threads by setting the environment variable PROTK_OMSSA_NTHREADS to the number of threads you would like OMSSA to use. Please see http://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies for details on setting environment variables for galaxy tools </readme> </package> </tool_dependency>