# HG changeset patch
# User iracooke
# Date 1394074113 18000
# Node ID c3b14e905da2b685a3df6bcb33c6895c3015a0e9
# Parent  7d614a857e51d21fd1f4103a431a1625a1250be5
Make MSGFPlus.jar executable to find it with which

diff -r 7d614a857e51 -r c3b14e905da2 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Mar 05 01:07:54 2014 -0500
+++ b/tool_dependencies.xml	Wed Mar 05 21:48:33 2014 -0500
@@ -8,6 +8,9 @@
                     <source>MSGFPlus.jar</source>
                     <destination>$INSTALL_DIR</destination>
                 </action>
+                
+                <!-- This is purely so we can find it using which -->
+                <action type="shell_command">chmod u+x $INSTALL_DIR/MSGFPlus.jar</action>
                 <action type="set_environment">
                     <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
                     <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>