Mercurial > repos > iracooke > package_msgfplus_20140210
comparison tool_dependencies.xml @ 3:c3b14e905da2 draft default tip
Make MSGFPlus.jar executable to find it with which
| author | iracooke |
|---|---|
| date | Wed, 05 Mar 2014 21:48:33 -0500 |
| parents | 7d614a857e51 |
| children |
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| 2:7d614a857e51 | 3:c3b14e905da2 |
|---|---|
| 6 <action type="download_by_url">http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.20140210.zip</action> | 6 <action type="download_by_url">http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.20140210.zip</action> |
| 7 <action type="move_file"> | 7 <action type="move_file"> |
| 8 <source>MSGFPlus.jar</source> | 8 <source>MSGFPlus.jar</source> |
| 9 <destination>$INSTALL_DIR</destination> | 9 <destination>$INSTALL_DIR</destination> |
| 10 </action> | 10 </action> |
| 11 | |
| 12 <!-- This is purely so we can find it using which --> | |
| 13 <action type="shell_command">chmod u+x $INSTALL_DIR/MSGFPlus.jar</action> | |
| 11 <action type="set_environment"> | 14 <action type="set_environment"> |
| 12 <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable> | 15 <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable> |
| 13 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable> | 16 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable> |
| 14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 15 </action> | 18 </action> |