# HG changeset patch
# User iracooke
# Date 1382590292 14400
# Node ID 163151db31b2aa60c26ff48e8c15bd79f36ae1b4
# Parent  cbf3fe41077ac85cb34d1e4cf0848adabb88336c
Uploaded

diff -r cbf3fe41077a -r 163151db31b2 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Oct 24 00:49:35 2013 -0400
+++ b/tool_dependencies.xml	Thu Oct 24 00:51:32 2013 -0400
@@ -1,17 +1,20 @@
 <?xml version="1.0"?>
 <tool_dependency>
-        <package name="msgfplus" version="20130828">
-            <install version="1.0">
+	<package name="msgfplus" version="20130828">
+   		<install version="1.0">
+   			<actions>
 				<action type="download_by_url">http://proteomics.ucsd.edu/Downloads/MSGFPlus.20130828.zip</action>
-                <action type="move_directory_files">
-                    <source_directory>.</source_directory>
-                    <destination_directory>$INSTALL_DIR</destination_directory>
-                </action>
-	            <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
-                <environment_variable action="set_to" name="PROTK_MSGFPLUS_ROOT">$INSTALL_DIR</environment_variable>
+    	     	<action type="move_directory_files">
+        	    	<source_directory>.</source_directory>
+            	  	<destination_directory>$INSTALL_DIR</destination_directory>
+          		</action>
+          		<action type="set_environment">
+	            	<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                	<environment_variable action="set_to" name="PROTK_MSGFPLUS_ROOT">$INSTALL_DIR</environment_variable>
+            	</action>
             </actions>            
         </install>
-            <readme>
+           <readme>
             	Downloads prebuilt binaries of the OMSSA search engine from NCBI
             </readme>
         </package>