comparison msgfplus_search.xml @ 1:d3994c3ec487 draft

Uploaded

0:a84952540969

        $fixed_mods
        #for $custom_fix_mod in $custom_fix_mods:
        ,${custom_fix_mod.custom_mod}
        #end for
        '
        $input_file 
        -o $output 
        -r 
        --enzyme=$enzyme 
        --precursor-ion-tol-units=$precursor_tolu 

        --max-pep-len=$max_pep_len
        --max-pep-charge=$max_pep_charge
        --min-pep-charge=$min_pep_charge
        --num-reported-matches=$num_reported_matches
        --java-mem=$java_mem
        #if $pepxml_output_use
        #else
        --no-pepxml
        #end if
    </command>

1:d3994c3ec487

        $fixed_mods
        #for $custom_fix_mod in $custom_fix_mods:
        ,${custom_fix_mod.custom_mod}
        #end for
        '

        $input_file 
        -o $output 
        -r 
        --enzyme=$enzyme 
        --precursor-ion-tol-units=$precursor_tolu 

        --max-pep-len=$max_pep_len
        --max-pep-charge=$max_pep_charge
        --min-pep-charge=$min_pep_charge
        --num-reported-matches=$num_reported_matches
        --java-mem=$java_mem
        #if $pepxml_output_use:
        #else
        --no-pepxml
        #end if
    </command>