Mercurial > repos > imgteam > slice_image
comparison slice_image.xml @ 1:445a3246ceac draft default tip
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/slice_image/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
| author | imgteam |
|---|---|
| date | Wed, 18 Dec 2019 09:59:42 +0000 |
| parents | 694d3a83e6f9 |
| children |
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| 0:694d3a83e6f9 | 1:445a3246ceac |
|---|---|
| 1 <tool id="ip_slice_image" name="Slice Image" version="0.2"> | 1 <tool id="ip_slice_image" name="Slice Image" version="0.3"> |
| 2 <description>into smaller patches</description> | 2 <description>into smaller patches</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.14.2">scikit-image</requirement> | 4 <requirement type="package" version="0.14.2">scikit-image</requirement> |
| 5 <requirement type="package" version="1.15.4">numpy</requirement> | 5 <requirement type="package" version="1.15.4">numpy</requirement> |
| 6 <!-- <requirement type="package" version="1.1.0">scipy</requirement> --> | 6 <requirement type="package" version="1.1.0">scipy</requirement> |
| 7 <requirement type="package" version="0.15.1">tifffile</requirement> | |
| 7 </requirements> | 8 </requirements> |
| 8 <command> | 9 <command detect_errors="aggressive"> |
| 9 <![CDATA[ | 10 <![CDATA[ |
| 10 mkdir ./out && | 11 mkdir ./out && |
| 11 python '$__tool_directory__/slice_image.py' | 12 python '$__tool_directory__/slice_image.py' |
| 12 '$input_file' ./out | 13 '$input_file' ./out |
| 13 --stride $stride --window_size $patch_size --bg_thresh $bg_thresh | 14 --stride $stride --window_size $patch_size --bg_thresh $bg_thresh |