comparison skimage.xml @ 2:c84400b58260 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/ridge_filter/ commit c20c8e46a6391ec9759f1ae513ce0a779933af96

1:b8867c9e0526

    <description>with scikit-image</description>
    <macros>
        <import>creators.xml</import>
        <import>tests.xml</import>
        <token name="@TOOL_VERSION@">0.22.0</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <xml name="base_params">
            <param name="black_ridges" type="select" label="Mode of operation">
                <option value="true" selected="true">Enhance dark ridges (low image intensities)</option>
                <option value="false">Enhance bright ridges (high image intensities)</option>
            </param>

            <expand macro="base_params"/>
            <param name="alpha" type="float" min="0" value="0.5" label="Alpha"
                   help="Frangi correction constant that adjusts the filter's sensitivity to deviation from a plate-like structure."/>
            <param name="beta" type="float" min="0" value="0.5" label="Beta"
                   help="Frangi correction constant that adjusts the filter's sensitivity to deviation from a blob-like structure."/>
        </xml>
    </macros>
    <creator>
        <expand macro="creators/bmcv"/>
        <expand macro="creators/kostrykin"/>

            #end if

            #if $filter.filter_type == "frangi" or $filter.filter_type == "hessian"
                "alpha": $filter.alpha,
                "beta": $filter.beta,
            #end if

            #if $filter.filter_type == "laplace"
                "ksize": $filter.ksize,
            #end if

2:c84400b58260

    <description>with scikit-image</description>
    <macros>
        <import>creators.xml</import>
        <import>tests.xml</import>
        <token name="@TOOL_VERSION@">0.22.0</token>
        <token name="@VERSION_SUFFIX@">2</token>
        <xml name="base_params">
            <param name="black_ridges" type="select" label="Mode of operation">
                <option value="true" selected="true">Enhance dark ridges (low image intensities)</option>
                <option value="false">Enhance bright ridges (high image intensities)</option>
            </param>

            <expand macro="base_params"/>
            <param name="alpha" type="float" min="0" value="0.5" label="Alpha"
                   help="Frangi correction constant that adjusts the filter's sensitivity to deviation from a plate-like structure."/>
            <param name="beta" type="float" min="0" value="0.5" label="Beta"
                   help="Frangi correction constant that adjusts the filter's sensitivity to deviation from a blob-like structure."/>
            <param name="gamma" type="float" min="0" value="" label="Gamma" optional="true"
                   help="Frangi correction constant that adjusts the filter's sensitivity to areas of high variance/texture/structure. Leave empty to use the default."/>
        </xml>
    </macros>
    <creator>
        <expand macro="creators/bmcv"/>
        <expand macro="creators/kostrykin"/>

            #end if

            #if $filter.filter_type == "frangi" or $filter.filter_type == "hessian"
                "alpha": $filter.alpha,
                "beta": $filter.beta,
                #if str($filter.gamma) != ""
                    "gamma": $filter.gamma,
                #end if
            #end if

            #if $filter.filter_type == "laplace"
                "ksize": $filter.ksize,
            #end if