diff points2label.xml @ 3:2ae122d5d85a draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/points2labelimage/ commit 78614a9010c2ca0e1fa5973639c05ab74bcdb148

--- a/points2label.xml	Fri Sep 27 17:41:06 2024 +0000
+++ b/points2label.xml	Wed Apr 23 14:37:31 2025 +0000
@@ -3,7 +3,7 @@
     <macros>
         <import>creators.xml</import>
         <import>tests.xml</import>
-        <token name="@TOOL_VERSION@">0.4</token>
+        <token name="@TOOL_VERSION@">0.4.1</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <creator>
@@ -46,7 +46,7 @@
         <data name="output" format="tiff" />
     </outputs>
     <tests>
-        <!-- Binary / TSV without header -->
+        <!-- Binary / TSV without header / Points -->
         <test>
             <param name="input" value="input1.tsv" />
             <param name="shapex" value="30" />
@@ -56,7 +56,7 @@
             <param name="binary" value="true" />
             <expand macro="tests/binary_image_diff" name="output" value="output1_binary.tif" ftype="tiff" />
         </test>
-        <!-- Binary / TSV with header -->
+        <!-- Binary / TSV with header / Circles -->
         <test>
             <param name="input" value="input2.tsv" />
             <param name="shapex" value="205" />
@@ -66,7 +66,7 @@
             <param name="binary" value="true" />
             <expand macro="tests/binary_image_diff" name="output" value="output2_binary.tif" ftype="tiff" />
         </test>
-        <!-- Labeled / TSV with header -->
+        <!-- Labeled / TSV with header / Circles -->
         <test>
             <param name="input" value="input2.tsv" />
             <param name="shapex" value="205" />
@@ -76,7 +76,7 @@
             <param name="binary" value="false" />
             <expand macro="tests/label_image_diff" name="output" value="output2.tif" ftype="tiff" />
         </test>
-        <!-- Binary / TSV with header / TSV with labels -->
+        <!-- Binary / TSV with header / TSV with labels / Circles -->
         <test>
             <param name="input" value="input3.tsv" />
             <param name="shapex" value="200" />
@@ -86,7 +86,7 @@
             <param name="binary" value="true" />
             <expand macro="tests/binary_image_diff" name="output" value="output3_binary.tif" ftype="tiff" />
         </test>
-        <!-- Labeled / TSV with header / TSV with labels -->
+        <!-- Labeled / TSV with header / TSV with labels / Circles -->
         <test>
             <param name="input" value="input3.tsv" />
             <param name="shapex" value="200" />
@@ -96,6 +96,16 @@
             <param name="binary" value="false" />
             <expand macro="tests/label_image_diff" name="output" value="output3.tif" ftype="tiff" />
         </test>
+        <!-- Labeled / TSV with header / TSV with labels / Rectangles -->
+        <test>
+            <param name="input" value="input4.tsv" />
+            <param name="shapex" value="200" />
+            <param name="shapey" value="100" />
+            <param name="has_header" value="true" />
+            <param name="swap_xy" value="false" />
+            <param name="binary" value="false" />
+            <expand macro="tests/label_image_diff" name="output" value="output4.tif" ftype="tiff" />
+        </test>
     </tests>
     <help>
 
@@ -113,6 +123,8 @@
         - ``pos_y`` or ``POS_Y``: This column corresponds to the Y coordinates.
         - If a ``radius`` or ``RADIUS`` column is present, then the points will be rasterized as circles of the
           corresponding radii.
+        - If ``width`` or ``WIDTH`` and ``height`` or ``HEIGHT`` columns are present, then the points will be rasterized
+          as rectangles of the corresponding size.
         - If a ``label`` or ``LABEL`` column is present, then the corresponding labels will be used for rasterization
           (unless "Produce binary image" is activated). Different points are allowed to use the same label.