Mercurial > repos > imgteam > libcarna_render

diff render.py @ 4:a9f10dceb17e draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/libcarna/ commit 99d6ebe67515f1362ea4412b143ab2a140c8d631
author imgteam
date Tue, 13 Jan 2026 12:21:55 +0000
parents 31a2e1909ae5
children
line wrap: on
line diff
--- a/render.py	Tue Jan 06 11:26:05 2026 +0000
+++ b/render.py	Tue Jan 13 12:21:55 2026 +0000
@@ -70,6 +70,7 @@
             GEOMETRY_TYPE_INTENSITIES,
             intensities.normalize_axes_like(tool.args.params['axes']).data,
             parent=root,
+            units=tool.args.params['units'],
             spacing=[
                 {
                     'X': intensities.metadata.pixel_size[0] or 1,
@@ -123,6 +124,7 @@
                         value if val_type == 'relative' else intensities_volume.normalized(value),
                     )
                 cmap_kwargs['ramp'] = tuple(ramp_values)
+                cmap_kwargs['n_samples'] = 1000  # high precision is required when sampling ramps to avoid "soft" corners
             mode.cmap(tool.args.params['colormap'], **cmap_kwargs)
 
         # Render