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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit 6db86b8b65a0e05b7f3541d505fbe900633fc72a
author imgteam
date Fri, 19 Dec 2025 15:02:55 +0000
parents 01155dd89628
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2812afc5f30a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit 6db86b8b65a0e05b7f3541d505fbe900633fc72a
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1 <tool id="iscc_sum" name="Generate ISCC-CODE" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="24.1">
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2 <description>with ISCC-SUM</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 <import>creators.xml</import>
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7 </macros>
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8 <expand macro="requirements" />
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9 <expand macro="version_command" />
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10 <creator>
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11 <expand macro="creators/iscc" />
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12 <expand macro="creators/lco" />
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13 <expand macro="creators/maartenpaul" />
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14 <expand macro="creators/etzm" />
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15 </creator>
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17 <command detect_errors="exit_code"><![CDATA[
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18 ## Generate ISCC-CODE for input dataset
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19 iscc-sum '${input_file}' | cut -d':' -f2 | cut -d' ' -f1 >> '${output_file}'
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20 ]]></command>
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21
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22 <inputs>
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23 <param name="input_file" type="data" format="data" label="Input file"
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24 help="Any file type - ISCC-SUM will generate an ISCC-CODE for content identification and verification. When a collection is provided, generates one ISCC-CODE per dataset."/>
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25 </inputs>
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27 <outputs>
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28 <data name="output_file" format="txt" label="${tool.name} on ${on_string}"/>
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29 </outputs>
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31 <tests>
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32 <!-- Test 1: Single dataset PNG -->
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33 <test expect_num_outputs="1">
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34 <param name="input_file" value="test1.png"/>
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35 <output name="output_file">
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36 <assert_contents>
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37 <has_line line="K4AOMGOGQJA4Y46PAC4YPPA63GKD5RVFPR7FU3I4OOEW44TYXNYOTMY" />
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38 <has_n_lines n="1" />
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39 </assert_contents>
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40 </output>
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41 </test>
1
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43 <!-- Test 2: Single dataset FASTA -->
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44 <test expect_num_outputs="1">
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45 <param name="input_file" value="test3.fasta"/>
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46 <output name="output_file">
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47 <assert_contents>
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48 <has_line line="K4AKF7PTZ7JTAAYZ7YZHZPR5RETKYXXE7RTBTJA4JX5GQQMSLZRC6QQ" />
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49 <has_n_lines n="1" />
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50 </assert_contents>
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51 </output>
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52 </test>
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53
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54 <!-- Test 3: Single dataset TIFF -->
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55 <test expect_num_outputs="1">
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56 <param name="input_file" value="test2.tiff"/>
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57 <output name="output_file">
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58 <assert_contents>
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59 <has_line line="K4AGSPOSB5SS2X427WZ27QASTSBVTS55DXLMFDF7WOJKEOSTDEI3OXQ" />
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60 <has_n_lines n="1" />
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61 </assert_contents>
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62 </output>
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63 </test>
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64 </tests>
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65
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66 <help><![CDATA[
1
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67 What it does
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68 ============
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69
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70 Generates an ISCC-CODE (International Standard Content Code) for datasets using the ISCC-SUM algorithm.
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72 The ISCC-SUM creates a content-derived identifier that:
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73
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74 - Creates a unique 55-character ISCC-CODE based on dataset content
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75 - Enables both exact matching (checksum) and similarity detection
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76 - Works with any file format
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77
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78 Dataset Mapping
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79 ===============
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81 When you provide a collection, Galaxy automatically runs this tool once per dataset, generating individual ISCC-CODEs for each dataset in the collection.
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82
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83 Output
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84 ======
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85
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86 A text file containing the ISCC-CODE (55 characters)
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87
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88 Example output::
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89
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90 K4AOMGOGQJA4Y46PAC4YPPA63GKD5RVFPR7FU3I4OOEW44TYXNYOTMY
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91
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92 Use Cases
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93 =========
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94
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95 - Generate ISCC-CODEs for file integrity verification
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96 - Create content identifiers for duplicate detection
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97 - Track file provenance and changes over time
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98 - Enable similarity-based file comparison
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99
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100 ISCC-CODE Structure
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101 ===================
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102
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103 The 55-character ISCC-CODE is composed of multiple ISCC-UNITs:
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104
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105 - **Data-Code**: Content similarity hash (enables fuzzy matching for similar files)
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106 - **Instance-Code**: Exact file checksum (for bit-perfect verification)
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107
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108 This combination creates an ISCC-CODE with SubType SUM, hence the name ISCC-SUM.
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109
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110 Workflow Examples
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111 =================
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112
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113 Generate ISCC-CODEs for a collection
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114 -------------------------------------
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115
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116 ::
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117
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118 Input: Collection of 100 datasets
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119 ↓
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120 [Generate ISCC-CODE] ← runs 100 times
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121 ↓
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122 Output: Collection of 100 ISCC-CODE files
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123 ↓
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124 [Collapse Collection] ← Galaxy tool
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125 ↓
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126 Result: Single file with all ISCC-CODEs
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127
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128 Create reference ISCC-CODEs
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129 ----------------------------
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130
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131 ::
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132
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133 Input: Original datasets
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134 ↓
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135 [Generate ISCC-CODE]
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136 ↓
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137 Store ISCC-CODEs for future verification
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138
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139 Compare datasets
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140 ----------------
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141
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142 ::
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143
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144 Dataset A → [Generate ISCC-CODE] → ISCC-CODE A
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145 Dataset B → [Generate ISCC-CODE] → ISCC-CODE B
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146 ↓
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147 Compare ISCC-CODEs
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148 ↓
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149 Result: Exact match or similarity score
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150
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151 More Information
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152 ================
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153
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154 For details about ISCC: https://sum.iscc.codes/ and https://iscc.codes/
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155 For ISCC structure and subtypes: https://ieps.iscc.codes/iep-0001/
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156 ]]></help>
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158 <expand macro="citations" />
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159
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160 </tool>