comparison imagecoordinates_flipaxis.xml @ 1:fb6b557a2937 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit da043bdec956714abb0fa82f278931bbe1a6d41d

0:c7a4d8a8b55e

    <requirement type="package" version="0.23.4" >pandas</requirement>
  </requirements>
  <command detect_errors="aggressive"> 
        <![CDATA[
        python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height
        ]]> 
  </command>
  <inputs> 
    <param name="input" type="data" format="tabular" label="File with image coordinates"/> 
    <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/>
  </inputs>
  <outputs>
    <data name="output" format="tabular"/>
  </outputs>
  <tests>
    <test>
	    <param name="input" value="table.tsv" />
      <param name="img_height" value="500"/>
      <output name="output" value="out2.tsv" ftype="tabular" />
    </test>
  </tests>
  <help>Makes x the horizontal axis (left to right) and y the vertical axis (bottom to top), 
  like in a coordinate system.</help>
  <citations>

1:fb6b557a2937

    <requirement type="package" version="0.23.4" >pandas</requirement>
  </requirements>
  <command detect_errors="aggressive"> 
        <![CDATA[
        python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height
        $offset_x $offset_y
        ]]> 
  </command>
  <inputs> 
    <param name="input" type="data" format="tabular" label="File with image coordinates"/> 
    <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/>
    <param name="offset_x" type="integer" value="0" label="Added offset in x direction (=width direction)" />
    <param name="offset_y" type="integer" value="0" label="Added offset in y direction (=height direction)" />
    </inputs>
  <outputs>
    <data name="output" format="tabular"/>
  </outputs>
  <tests>
    <test>
	    <param name="input" value="table.tsv" />
      <output name="output" value="out.tsv" ftype="tabular" />
      <param name="img_height" value="500"/>
    </test>
    <test>
	    <param name="input" value="table.tsv" />
      <output name="output" value="out_offset.tsv" ftype="tabular" />
      <param name="img_height" value="500"/>
      <param name="offset_x" value="1"/>
      <param name="offset_y" value="2"/>
    </test>
  </tests>
  <help>Makes x the horizontal axis (left to right) and y the vertical axis (bottom to top), 
  like in a coordinate system.</help>
  <citations>