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annotate macros.xml @ 0:199de6887566 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
author imgteam
date Thu, 01 Jan 2026 10:26:58 +0000
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199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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diff changeset
1 <macros>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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2 <token name="@TOOL_VERSION@">0.27.0</token>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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3 <token name="@VERSION_SUFFIX@">0</token>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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4 <xml name="description">
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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5 <description>with highdicom</description>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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6 </xml>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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7 <xml name="xrefs">
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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8 <xrefs>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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9 <xref type="bio.tools">galaxy_image_analysis</xref>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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10 <xref type="bio.tools">highdicom</xref>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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11 </xrefs>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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12 </xml>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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13 <xml name="requirements">
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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14 <requirements>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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15 <requirement type="package" version="@TOOL_VERSION@">highdicom</requirement>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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16 <requirement type="package" version="3.0.1">pydicom</requirement>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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17 <requirement type="package" version="0.5.2">giatools</requirement>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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18 <requirement type="package" version="6.0.3">pyyaml</requirement>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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19 </requirements>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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20 </xml>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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21 <token name="@DICOM_INTRO@">
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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22 DICOM is a widely established file format in medical imaging. A DICOM dataset contains rich metadata (patient, study
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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23 info) and the actual medical image pixel or voxel data. The image data can be single-channel or multi-channel, and it
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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24 can also be organized in multiple frames (e.g., spatial tiles of a mosaic, spatial slices, or time steps).
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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25 </token>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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26 <xml name="citations">
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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27 <citations>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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28 <citation type="doi">10.1007/s10278-022-00683-y</citation>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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29 <citation type="doi">10.5281/zenodo.13824606</citation>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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30 </citations>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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31 </xml>
199de6887566 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/highdicom/ commit 3a064f9bbb0eb56d752df40eb467b74da31711ce
imgteam
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32 </macros>