Mercurial > repos > imgteam > curve_fitting

changeset 6:ddf48f1dc06c draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/curve_fitting/ commit e5a00acbad81d7a7a4ca21edf79e9f1104f44e95
author imgteam
date Fri, 06 Mar 2026 18:10:16 +0000
parents 44fbc0780ae3
children
files curve_fitting.xml
diffstat 1 files changed, 8 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/curve_fitting.xml	Thu Feb 19 20:52:01 2026 +0000
+++ b/curve_fitting.xml	Fri Mar 06 18:10:16 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="ip_curve_fitting" name="Perform curve fitting" version="0.0.4" profile="20.05">
+<tool id="ip_curve_fitting" name="Perform curve fitting" version="0.0.5" profile="20.05">
     <description></description>
     <macros>
         <import>creators.xml</import>
@@ -17,6 +17,9 @@
         <requirement type="package" version="2.2.2">pandas</requirement>
         <requirement type="package" version="1.16.3">scipy</requirement>
     </requirements>
+    <required_files>
+        <include type="glob" path="*.py"/>
+    </required_files>
     <command>
     <![CDATA[
 
@@ -51,7 +54,7 @@
     </inputs>
     <outputs>
         <collection type="list" name="output" label="Curve fitting on ${on_string}">
-            <discover_datasets directory="output" pattern="__name__" format="tsv"/>
+            <discover_datasets directory="output" pattern="__name__" format="tabular"/>
         </collection>
     </outputs>
     <tests>
@@ -61,7 +64,7 @@
             <param name="penalty" value="abs"/>
             <param name="alpha" value="0.01"/>
             <output_collection name="output" type="list" count="1">
-                <element name="curve1.tsv" value="output1/curve1.tsv" ftype="tsv" compare="diff"/>
+                <element name="curve1.tsv" value="output1/curve1.tsv" ftype="tabular" compare="diff"/>
             </output_collection>
         </test>
         <test>
@@ -70,8 +73,8 @@
             <param name="penalty" value="abs"/>
             <param name="alpha" value="0.01"/>
             <output_collection name="output" type="list" count="2">
-                <element name="curve1.tsv" value="output2/curve1.tsv" ftype="tsv" compare="diff"/>
-                <element name="curve2.tsv" value="output2/curve2.tsv" ftype="tsv" compare="diff"/>
+                <element name="curve1.tsv" value="output2/curve1.tsv" ftype="tabular" compare="diff"/>
+                <element name="curve2.tsv" value="output2/curve2.tsv" ftype="tabular" compare="diff"/>
             </output_collection>
         </test>
     </tests>