Mercurial > repos > imgteam > color_deconvolution
comparison color_deconvolution.xml @ 3:469cb58a3be9 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/color_deconvolution/ commit 285c5933cd065bb904026cbea98f5488a0d9510d
| author | imgteam |
|---|---|
| date | Wed, 17 Dec 2025 12:43:06 +0000 |
| parents | 387414aa6496 |
| children |
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| 2:387414aa6496 | 3:469cb58a3be9 |
|---|---|
| 1 <tool id="ip_color_deconvolution" name="Perform color deconvolution or transformation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> | 1 <tool id="ip_color_deconvolution" name="Perform color deconvolution or transformation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> |
| 2 <description></description> | 2 <description></description> |
| 3 <macros> | 3 <macros> |
| 4 <import>creators.xml</import> | 4 <import>creators.xml</import> |
| 5 <import>tests.xml</import> | 5 <import>tests.xml</import> |
| 6 <token name="@TOOL_VERSION@">0.9</token> | 6 <token name="@TOOL_VERSION@">0.9</token> |
| 22 <requirement type="package" version="2.1.2">numpy</requirement> | 22 <requirement type="package" version="2.1.2">numpy</requirement> |
| 23 <requirement type="package" version="2024.9.20">tifffile</requirement> | 23 <requirement type="package" version="2024.9.20">tifffile</requirement> |
| 24 <requirement type="package" version="0.3.1">giatools</requirement> | 24 <requirement type="package" version="0.3.1">giatools</requirement> |
| 25 </requirements> | 25 </requirements> |
| 26 <command detect_errors="aggressive"> | 26 <command detect_errors="aggressive"> |
| 27 <![CDATA[ | 27 <![CDATA[ |
| 28 | 28 |
| 29 python '$__tool_directory__/color_deconvolution.py' | 29 python '$__tool_directory__/color_deconvolution.py' |
| 30 | 30 |
| 31 '$input' | 31 '$input' |
| 32 '$output' | 32 '$output' |
| 148 | 148 |
| 149 <!-- Tests with incompatible input files (should fail) --> | 149 <!-- Tests with incompatible input files (should fail) --> |
| 150 | 150 |
| 151 <test expect_failure="true"> | 151 <test expect_failure="true"> |
| 152 <!-- Test with image that only has 2 axes instead of required 3 --> | 152 <!-- Test with image that only has 2 axes instead of required 3 --> |
| 153 <param name="input" value="im_axes_yx.tif" /> | 153 <param name="input" value="im_axes_yx.tiff" /> |
| 154 <param name="convtype" value="rgb2hsv" /> | 154 <param name="convtype" value="rgb2hsv" /> |
| 155 </test> | 155 </test> |
| 156 <test expect_failure="true"> | 156 <test expect_failure="true"> |
| 157 <!-- Test with image that has 3 axes but YXZ instead of YXC (and 3 slices) --> | 157 <!-- Test with image that has 3 axes but YXZ instead of YXC (and 3 slices) --> |
| 158 <param name="input" value="he1_axes_yxz.tiff" /> | 158 <param name="input" value="he1_axes_yxz.tiff" /> |