Mercurial > repos > imgteam > colocalization_viz
changeset 3:9ccf11c11d85 draft default tip
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/colocalization_viz/ commit 0500f513ee291ae0f6fad32a0b4fad05cd59cb71"
| author | imgteam |
|---|---|
| date | Sat, 26 Feb 2022 17:11:36 +0000 |
| parents | 808111e56957 |
| children | |
| files | colocalization_viz.py colocalization_viz.xml |
| diffstat | 2 files changed, 10 insertions(+), 7 deletions(-) [+] |
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--- a/colocalization_viz.py Wed Dec 18 09:57:02 2019 +0000 +++ b/colocalization_viz.py Sat Feb 26 17:11:36 2022 +0000 @@ -1,13 +1,14 @@ -import skimage.io -import skimage.color -from skimage import img_as_uint -from skimage.exposure import equalize_adapthist -import numpy as np import argparse import sys +import numpy as np +import skimage.color +import skimage.io +from skimage import img_as_uint +from skimage.exposure import equalize_adapthist -# TODO make importable by python script + +# TODO make importable by python script def readImg(path): img = skimage.io.imread(path)
--- a/colocalization_viz.xml Wed Dec 18 09:57:02 2019 +0000 +++ b/colocalization_viz.xml Sat Feb 26 17:11:36 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="ip_colocalization" name="Colocalization" version="0.0.8"> +<tool id="ip_colocalization" name="Colocalization" version="0.0.9" profile="20.05"> <description>of two segmentation maps</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> @@ -29,6 +29,8 @@ **What it does** This tool overlays two segmentation maps and displays the colocalization results. + + Note: This tool is deprecated and may not be supported in future. Please use the tool "Overlay Images" instead. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>