Mercurial > repos > imgteam > binary2labelimage
diff validators.xml @ 4:8f0dd9a58ec3 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binary2labelimage/ commit f5a4de7535e433e3b0e96e0694e481b6643a54f8
| author | imgteam |
|---|---|
| date | Sat, 03 Jan 2026 14:14:05 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/validators.xml Sat Jan 03 14:14:05 2026 +0000 @@ -0,0 +1,45 @@ +<macros> + + <!-- Macros for validation of inputs --> + + <xml name="validators/is_single_channel"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `channels`. To cope with that, we allow all datasets + except those where we *know* that they are *not* single-channel. + --> + <validator type="expression" message="Dataset is a multi-channel image" + ><![CDATA[getattr(value.metadata, "channels", None) in (None, '') or int(value.metadata.channels) < 2]]></validator> + </xml> + + <xml name="validators/is_single_frame"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `frames`. To cope with that, we allow all datasets + except those where we *know* that they are *not* single-frame. + --> + <validator type="expression" message="Dataset is a multi-frame image" + ><![CDATA[getattr(value.metadata, "frames", None) in (None, '') or int(value.metadata.frames) < 2]]></validator> + </xml> + + <xml name="validators/is_2d"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `depth`. To cope with that, we allow all datasets + except those where we *know* that they are *not* 2-D. + --> + <validator type="expression" message="Dataset is a 3-D image" + ><![CDATA[getattr(value.metadata, "depth", None) in (None, '') or int(value.metadata.depth) < 2]]></validator> + </xml> + + <xml name="validators/is_binary"> + <!-- + The OME-Zarr datatype in Galaxy is currently not derived from the Image datatype, and it does + hence not inherit the metadata fields like `num_unique_values`. To cope with that, we allow all + datasets except those where we *know* that they are *not* binary. + --> + <validator type="expression" message="Dataset is not a binary image" + ><![CDATA[getattr(value.metadata, "num_unique_values", None) in (None, '') or int(value.metadata.num_unique_values) <= 2]]></validator> + </xml> + +</macros>
