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changeset 1:8ef57910245b draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 04:55:10 -0400
parents f2d41197a87f
children
files anisotropic_diffusion.py anisotropic_diffusion.xml
diffstat 2 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/anisotropic_diffusion.py	Sat Feb 09 14:12:36 2019 -0500
+++ b/anisotropic_diffusion.py	Mon Jul 22 04:55:10 2019 -0400
@@ -14,7 +14,7 @@
 parser.add_argument('gamma', type=float, help='Speed of diffusion', default=0.1)
 parser.add_argument('eqoption', type=int, choices=[1,2], help='Perona Malik diffusion equation', default=1)
 args = parser.parse_args()
-
+ 
 with warnings.catch_warnings():
 	warnings.simplefilter("ignore") #to ignore FutureWarning as well 
 
--- a/anisotropic_diffusion.xml	Sat Feb 09 14:12:36 2019 -0500
+++ b/anisotropic_diffusion.xml	Mon Jul 22 04:55:10 2019 -0400
@@ -1,11 +1,12 @@
-<tool id="ip_anisotropic_diffusion" name="Anisotropic Diffusion" version="0.1">
+<tool id="ip_anisotropic_diffusion" name="Anisotropic Diffusion" version="0.2"> 
     <description>Edge-preserving, Anisotropic diffusion</description>
     <requirements>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
         <requirement type="package" version="0.3.0">medpy</requirement>
         <requirement type="package" version="1.15.4">numpy</requirement>
-    </requirements>
-    <command>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
+    </requirements> 
+    <command detect_errors="aggressive">
         <![CDATA[
         python '$__tool_directory__/anisotropic_diffusion.py' '$input' '$output' '$niter' '$kappa' '$gamma' '$eqoption'
         ]]>