diff histogram_equalization.xml @ 1:77455af98d88 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 558152251d5d7a1bf77db91aa5388aca7a68ae62

--- a/histogram_equalization.xml	Tue Jul 23 14:06:42 2019 -0400
+++ b/histogram_equalization.xml	Fri Feb 20 09:56:36 2026 +0000
@@ -1,19 +1,35 @@
-<tool id="ip_histogram_equalization" name="Histogram equalization" version="0.0.1">
-   <description>automatic histogram equalization</description>
-   <requirements> 
-        <requirement type="package" version="0.14.2">scikit-image</requirement>
-        <requirement type="package" version="1.15.4">numpy</requirement>
-        <requirement type="package" version="5.3.0">pillow</requirement>
-        <requirement type="package" version="0.15.1">tifffile</requirement>
-   </requirements>
-   <command detect_errors="aggressive">
-   <![CDATA[
-   python '$__tool_directory__/histogram_equalization.py' '$input' '$output' $h_type
-   ]]>
-   </command>
-   <inputs>
-        <param name="input" type="data" format="tiff" label="Source file" />
-        <param name="h_type" type="select" label="Histogram Equalization Algorithm">
+<tool id="ip_histogram_equalization" name="Perform histogram equalization" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
+    <description>with scikit-image</description>
+    <macros>
+        <import>creators.xml</import>
+        <import>tests.xml</import>
+        <token name="@TOOL_VERSION@">0.25.2</token>
+        <token name="@VERSION_SUFFIX@">0</token>
+    </macros>
+    <creator>
+        <expand macro="creators/bmcv" />
+    </creator>
+    <edam_operations>
+        <edam_operation>operation_3443</edam_operation>
+    </edam_operations>
+    <xrefs>
+        <xref type="bio.tools">scikit-image</xref>
+        <xref type="biii">scikit-image</xref>
+    </xrefs>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">scikit-image</requirement>
+        <requirement type="package" version="2.3.5">numpy</requirement>
+        <requirement type="package" version="2025.5.10">tifffile</requirement>
+        <requirement type="package" version="0.1.2">giatools</requirement>
+    </requirements>
+    <command detect_errors="aggressive">
+    <![CDATA[
+    python '$__tool_directory__/histogram_equalization.py' '$input' '$output' $h_type
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="tiff" label="Input image" />
+        <param name="h_type" type="select" label="Histogram equalization algorithm">
           <option value="default">Stretching</option>
           <option value="clahe" selected="True">CLAHE</option>
         </param>
@@ -23,13 +39,20 @@
     </outputs>
     <tests>
         <test>
-            <param name="input" value="sample.tif"/>
-            <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/>
+            <param name="input" value="sample.tiff"/>
             <param name="h_type" value="default"/>
+            <expand macro="tests/intensity_image_diff" name="output" value="out.tiff" ftype="tiff"/>
+        </test>
+        <test>
+            <param name="input" value="sample.tiff"/>
+            <param name="h_type" value="clahe"/>
+            <expand macro="tests/intensity_image_diff" name="output" value="out_clahe.tiff" ftype="tiff"/>
         </test>
     </tests>
     <help>
-        Applies histogram equalization to an image.
+
+        **Applies histogram equalization to an image.**
+
     </help>
     <citations>
         <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>