diff 2d_feature_extraction.xml @ 6:8e3a52b74876 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction/ commit 5bf032c4908e344099fba24e914bd26367d24a90

--- a/2d_feature_extraction.xml	Sun Jan 04 20:56:17 2026 +0000
+++ b/2d_feature_extraction.xml	Mon Jan 05 14:35:43 2026 +0000
@@ -37,7 +37,7 @@
                     <param name="intensities" value="input/input1_uint8.tiff"/>
                     <param name="features" value="@FEATURE@"/>
                 </conditional>
-                <output name="output" ftype="tabular" value="output/input13-@FEATURE@.tsv"/>
+                <output name="output" ftype="tabular" value="output/input13-@FEATURE@.tsv" compare="re_match"/>
             </test>
         </xml>
     </macros>
@@ -132,7 +132,7 @@
                 <param name="mode" value="without-intensities"/>
                 <param name="features" value="label,area,area_convex,solidity"/>
             </conditional>
-            <output name="output" ftype="tabular" value="output/input12.tsv"/>
+            <output name="output" ftype="tabular" value="output/input12.tsv" compare="re_match"/>
         </test>
         <test>
             <param name="labels" value="input/input11.tiff"/>
@@ -141,7 +141,7 @@
                 <param name="intensities" value="input/input1_uint8.tiff"/>
                 <param name="features" value="area,mean_intensity,perimeter"/>
             </conditional>
-            <output name="output" ftype="tabular" value="output/input11.tsv"/>
+            <output name="output" ftype="tabular" value="output/input11.tsv" compare="re_match"/>
         </test>
         <!-- Single-channel 2-D Zarr (isolated features, verify that Dask arrays are converted to NumPy arrays whenever necessary) -->
         <expand macro="zarr-isolated-feature-test" feature="area"/>
@@ -172,7 +172,7 @@
                 <param name="intensities" value="input/input8_zyx.zarr"/>
                 <param name="features" value="area,area_convex,area_filled,axis_major_length,axis_minor_length,bbox,centroid,eccentricity,equivalent_diameter_area,euler_number,extent,inertia_tensor_eigvals,moments,moments_hu,orientation,perimeter,solidity,max_intensity,mean_intensity,min_intensity"/>
             </conditional>
-            <output name="output" ftype="tabular" value="output/input9.tsv"/>
+            <output name="output" ftype="tabular" value="output/input9.tsv" compare="re_match"/>
             <assert_stdout>
                 <has_line line='Skip feature that is not available for 3-D images: "eccentricity"'/>
                 <has_line line='Skip feature that is not available for 3-D images: "moments_hu"'/>