comparison 2d_feature_extraction.xml @ 7:048545339ced draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction/ commit b8e0b656d417db6e2ad0f187fc3c5afff0c3acd7

6:8e3a52b74876

    <description>with scikit-image</description>
    <macros>
        <import>creators.xml</import>
        <import>validators.xml</import>
        <token name="@TOOL_VERSION@">0.25.2</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <xml name="features">
            <param name="features" type="select" label="Available features" multiple="true" display="checkboxes"
                   help="*) Features marked with an asterisk are only available for 2-D images (not for 3-D images).">
                <option value="label" selected="true">Label from the label map</option>
                <yield/>

**Minor axis length:** The length of the minor axis of the ellipse that has the same normalized second central moments as the region.

**Bounding box:** Bounding box `(min_row, min_col, max_row, max_col)`. Pixels belonging to the bounding box are in the half-open interval `[min_row; max_row)` and `[min_col; max_col)`.

**Centroid:** Centroid coordinate tuple `(row, col)`.

**Eccentricity:** Eccentricity of the ellipse that has the same second-moments as the region. The eccentricity is the ratio of the focal distance (distance between focal points) over the major axis length. The value is in the interval [0, 1). When it is 0, the ellipse becomes a circle.

**Equivalent diameter:** The diameter of a circle with the same area as the region.

7:048545339ced

    <description>with scikit-image</description>
    <macros>
        <import>creators.xml</import>
        <import>validators.xml</import>
        <token name="@TOOL_VERSION@">0.25.2</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <xml name="features">
            <param name="features" type="select" label="Available features" multiple="true" display="checkboxes"
                   help="*) Features marked with an asterisk are only available for 2-D images (not for 3-D images).">
                <option value="label" selected="true">Label from the label map</option>
                <yield/>

**Minor axis length:** The length of the minor axis of the ellipse that has the same normalized second central moments as the region.

**Bounding box:** Bounding box `(min_row, min_col, max_row, max_col)`. Pixels belonging to the bounding box are in the half-open interval `[min_row; max_row)` and `[min_col; max_col)`.

**Centroid:** Centroid coordinates in separate columns ``centroid_x``, ``centroid_y``, and ``centroid_z`` when processing 3-D data.

**Eccentricity:** Eccentricity of the ellipse that has the same second-moments as the region. The eccentricity is the ratio of the focal distance (distance between focal points) over the major axis length. The value is in the interval [0, 1). When it is 0, the ellipse becomes a circle.

**Equivalent diameter:** The diameter of a circle with the same area as the region.