diff tool-data/rnastar_index2x_versioned.loc.sample @ 0:e23440b3332a draft

Uploaded

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+++ b/tool-data/rnastar_index2x_versioned.loc.sample	Tue May 25 15:14:56 2021 +0000
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+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of rna-star indexed sequences data files.
+#You will need to create these data files and then create a
+#rnastar_index2x_versioned.loc file similar to this one (store it in this
+directory) that points to the directories in which those files are stored.
+#The rnastar_index2x_versioned.loc file has this format (longer white space
+#characters are TAB characters):
+#
+#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>	<with_gene_model>	<version>
+#
+#The <with_gene_model> column should be 1 or 0, indicating whether the index
+#was built with annotations (i.e., --sjdbGTFfile and --sjdbOverhang were used)
+#or not.
+#
+#The <version> column indicates the STAR version that introduced the format of
+#the index, i.e., the oldest STAR version that could make use of the index.
+#
+#Note that STAR indices can become quite large. Consequently, it is only
+#advisable to create indices with annotations if it's known ahead of time that
+#(A) the annotations won't be frequently updated and (B) the read lengths used
+#will also rarely vary. If either of these is not the case, it's advisable to
+#create indices without annotations and then specify an annotation file and
+#maximum read length (minus 1) when running STAR.
+#
+#hg19   hg19    hg19 full   /mnt/galaxyIndices/genomes/hg19/rnastar	0	2.7.1a
+#hg19Ensembl   hg19Ensembl    hg19 full with Ensembl annotation   /mnt/galaxyIndices/genomes/hg19Ensembl/rnastar	1	2.7.1a
+