comparison roi_plot_thumbnails.py @ 6:71241c4dc4d0 draft

Uploaded

5:170e48a55078

class LinkRegion(object):
    """Region on picture with genomic interval."""

    def __init__(self, x1, y1, x2, y2, ref, begin_pos, end_pos):
        self.x1 = x1
        self.x2 = x2
        self.y1 = y1
        self.y2 = y2
        self.ref = ref
        self.begin_pos = begin_pos
        self.end_pos = end_pos


class RoiPlotGrid(object):
    """A grid of ROI plots.

        start_x, start_y = self.plotStart(self.idx)
        self.idx += 1
        # Register link region.
        self.link_regions.append(LinkRegion(
                start_x, start_y, start_x + self.width, start_y + self.height,
                record.ref, record.start_pos, record.end_pos))


class GridLinks(object):
    """Link information for one grid."""

            for gl in self.grid_links:
                vals = (gl.file_name, gl.file_name, self.grid.canvas_width, self.grid.canvas_height)
                f.write('<img src="%s" usemap="#%s" width="%d" height="%d" />\n' % vals)
                f.write('<map name="%s">\n' % gl.file_name)
                for lr in gl.link_regions:
                    locus = (lr.ref, lr.begin_pos + 1, lr.end_pos)
                    vals = {'x1': lr.x1, 'x2': lr.x2, 'y1': lr.y1, 'y2': lr.y2,
                            'title': '%s %d-%d' % locus,
                            'href': self.buildHref(lr.ref, lr.begin_pos, lr.end_pos),
                            'onclick': ''}
                    # Add onclick handler to prevent opening of new window.
                    vals['target_attr'] = ''
                    if self.args.link_target:

6:71241c4dc4d0

class LinkRegion(object):
    """Region on picture with genomic interval."""

    def __init__(self, x1, y1, x2, y2, ref, begin_pos, end_pos, name):
        self.x1 = x1
        self.x2 = x2
        self.y1 = y1
        self.y2 = y2
        self.ref = ref
        self.begin_pos = begin_pos
        self.end_pos = end_pos
        self.name = name


class RoiPlotGrid(object):
    """A grid of ROI plots.

        start_x, start_y = self.plotStart(self.idx)
        self.idx += 1
        # Register link region.
        self.link_regions.append(LinkRegion(
                start_x, start_y, start_x + self.width, start_y + self.height,
                record.ref, record.start_pos, record.end_pos, record.region_name))


class GridLinks(object):
    """Link information for one grid."""

            for gl in self.grid_links:
                vals = (gl.file_name, gl.file_name, self.grid.canvas_width, self.grid.canvas_height)
                f.write('<img src="%s" usemap="#%s" width="%d" height="%d" />\n' % vals)
                f.write('<map name="%s">\n' % gl.file_name)
                for lr in gl.link_regions:
                    locus_label = (lr.ref, lr.begin_pos + 1, lr.end_pos, lr.name)
                    vals = {'x1': lr.x1, 'x2': lr.x2, 'y1': lr.y1, 'y2': lr.y2,
                            'title': '%s %d-%d (%s)' % locus_label,
                            'href': self.buildHref(lr.ref, lr.begin_pos, lr.end_pos),
                            'onclick': ''}
                    # Add onclick handler to prevent opening of new window.
                    vals['target_attr'] = ''
                    if self.args.link_target: