Mercurial > repos > hackdna > refinery_test
view refinery_test_1-2.xml @ 7:5ac9c40dae35 draft
Add SPP workflow simulation.
author | hackdna |
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date | Mon, 13 May 2013 16:52:26 -0400 |
parents | f725e3820fb4 |
children | ee221004e3b4 |
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<tool id="refinery_test_1-2" name="Refinery test tool 1-2" version="0.1"> <description>for testing Galaxy workflow execution from Refinery</description> <command interpreter="python"> refinery_test_tool.py -i $input_file -o $output_file1 $output_file2 -e $exit_code -p $p_fail -s $sleep_time $stdout $stderr </command> <inputs> <param name="input_file" format="txt" type="data" label="Input file"/> <param name="sleep_time" type="integer" label="Sleep (seconds)" value="0" min="0"/> <param name="p_fail" type="float" label="Probability of failure [0.0, 1.0]" value="0.0" min="0.0" max="1.0"/> <param name="stdout" type="boolean" label="Write to standard out" truevalue="--stdout" falsevalue=""/> <param name="stderr" type="boolean" label="Write to standard error" truevalue="--stderr" falsevalue=""/> <param name="exit_code" type="integer" label="Exit code [0, 255]" value="0" min="0" max="255"/> </inputs> <outputs> <data format="txt" name="output_file1" label="Output file A"/> <data format="txt" name="output_file2" label="Output file B"/> </outputs> <stdio> <exit_code range="1:" level="fatal" /> <regex match=".+" source="stdout" level="fatal" description="Tool produced output to standard out" /> <regex match=".+" source="stderr" level="fatal" description="Tool produced output to standard error" /> </stdio> <help> .. class:: infomark **Purpose** To test Galaxy workflow execution and monitoring from Refinery. ----- .. class:: infomark **Inputs and outputs** This wrapper will accept one text file as input and produce two output files with content from input. *Note:* You must set the "Probability of failure" parameter to a non-zero value for "Write to standard out", "Write to standard error" or "Exit code" to take effect. </help> </tool>