Mercurial > repos > hackdna > refinery_test
diff Test_workflow__SPP_analog.ga @ 10:ca9a5aa3a59a draft default tip
Update sample workflows to provide empty output file option.
| author | hackdna |
|---|---|
| date | Mon, 13 May 2013 18:27:37 -0400 |
| parents | 5ac9c40dae35 |
| children |
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--- a/Test_workflow__SPP_analog.ga Mon May 13 18:27:14 2013 -0400 +++ b/Test_workflow__SPP_analog.ga Mon May 13 18:27:37 2013 -0400 @@ -74,7 +74,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -103,7 +103,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -132,7 +132,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -161,7 +161,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -190,7 +190,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -219,7 +219,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -248,7 +248,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -301,7 +301,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_2-6/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"sleep_time\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"input_file1\": \"null\", \"input_file2\": \"null\"}", + "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"sleep_time\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"input_file1\": \"null\", \"input_file2\": \"null\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -330,7 +330,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -359,7 +359,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -388,7 +388,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -417,7 +417,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -446,7 +446,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -475,7 +475,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": [] @@ -504,7 +504,7 @@ "post_job_actions": {}, "tool_errors": null, "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", - "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", + "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", "tool_version": "0.1", "type": "tool", "user_outputs": []