Mercurial > repos > hackdna > refinery_test
comparison refinery_test_2-1.xml @ 8:ee221004e3b4 draft
Add an option to produce empty files.
| author | hackdna |
|---|---|
| date | Mon, 13 May 2013 17:59:26 -0400 |
| parents | f725e3820fb4 |
| children |
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| 7:5ac9c40dae35 | 8:ee221004e3b4 |
|---|---|
| 1 <tool id="refinery_test_2-1" name="Refinery test tool 2-1" version="0.1"> | 1 <tool id="refinery_test_2-1" name="Refinery test tool 2-1" version="0.1"> |
| 2 <description>for testing Galaxy workflow execution from Refinery</description> | 2 <description>for testing Galaxy workflow execution from Refinery</description> |
| 3 | 3 |
| 4 <command interpreter="python"> | 4 <command interpreter="python"> |
| 5 refinery_test_tool.py -i $input_file1 $input_file2 -o $output_file -e $exit_code -p $p_fail -s $sleep_time $stdout $stderr | 5 refinery_test_tool.py -i $input_file1 $input_file2 -o $output_file -e $exit_code -p $p_fail -s $sleep_time $stdout $stderr $empty_outfile |
| 6 </command> | 6 </command> |
| 7 | 7 |
| 8 <inputs> | 8 <inputs> |
| 9 <param name="input_file1" format="txt" type="data" label="Input file A"/> | 9 <param name="input_file1" format="txt" type="data" label="Input file A"/> |
| 10 <param name="input_file2" format="txt" type="data" label="Input file B"/> | 10 <param name="input_file2" format="txt" type="data" label="Input file B"/> |
| 11 <param name="sleep_time" type="integer" label="Sleep (seconds)" value="0" min="0"/> | 11 <param name="sleep_time" type="integer" label="Sleep (seconds)" value="0" min="0"/> |
| 12 <param name="empty_outfile" type="boolean" label="Produce empty output file" truevalue="--empty_outfile" falsevalue=""/> | |
| 12 <param name="p_fail" type="float" label="Probability of failure [0.0, 1.0]" value="0.0" min="0.0" max="1.0"/> | 13 <param name="p_fail" type="float" label="Probability of failure [0.0, 1.0]" value="0.0" min="0.0" max="1.0"/> |
| 13 <param name="stdout" type="boolean" label="Write to standard out" truevalue="--stdout" falsevalue=""/> | 14 <param name="stdout" type="boolean" label="Write to standard out" truevalue="--stdout" falsevalue=""/> |
| 14 <param name="stderr" type="boolean" label="Write to standard error" truevalue="--stderr" falsevalue=""/> | 15 <param name="stderr" type="boolean" label="Write to standard error" truevalue="--stderr" falsevalue=""/> |
| 15 <param name="exit_code" type="integer" label="Exit code [0, 255]" value="0" min="0" max="255"/> | 16 <param name="exit_code" type="integer" label="Exit code [0, 255]" value="0" min="0" max="255"/> |
| 16 </inputs> | 17 </inputs> |