Mercurial > repos > hackdna > refinery_test
comparison Test_workflow__SPP_analog.ga @ 10:ca9a5aa3a59a draft default tip
Update sample workflows to provide empty output file option.
| author | hackdna |
|---|---|
| date | Mon, 13 May 2013 18:27:37 -0400 |
| parents | 5ac9c40dae35 |
| children |
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| 9:b72564825e0c | 10:ca9a5aa3a59a |
|---|---|
| 72 "top": 242 | 72 "top": 242 |
| 73 }, | 73 }, |
| 74 "post_job_actions": {}, | 74 "post_job_actions": {}, |
| 75 "tool_errors": null, | 75 "tool_errors": null, |
| 76 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 76 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 77 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 77 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 78 "tool_version": "0.1", | 78 "tool_version": "0.1", |
| 79 "type": "tool", | 79 "type": "tool", |
| 80 "user_outputs": [] | 80 "user_outputs": [] |
| 81 }, | 81 }, |
| 82 "3": { | 82 "3": { |
| 101 "top": 362 | 101 "top": 362 |
| 102 }, | 102 }, |
| 103 "post_job_actions": {}, | 103 "post_job_actions": {}, |
| 104 "tool_errors": null, | 104 "tool_errors": null, |
| 105 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 105 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 106 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 106 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 107 "tool_version": "0.1", | 107 "tool_version": "0.1", |
| 108 "type": "tool", | 108 "type": "tool", |
| 109 "user_outputs": [] | 109 "user_outputs": [] |
| 110 }, | 110 }, |
| 111 "4": { | 111 "4": { |
| 130 "top": 246 | 130 "top": 246 |
| 131 }, | 131 }, |
| 132 "post_job_actions": {}, | 132 "post_job_actions": {}, |
| 133 "tool_errors": null, | 133 "tool_errors": null, |
| 134 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 134 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 135 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 135 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 136 "tool_version": "0.1", | 136 "tool_version": "0.1", |
| 137 "type": "tool", | 137 "type": "tool", |
| 138 "user_outputs": [] | 138 "user_outputs": [] |
| 139 }, | 139 }, |
| 140 "5": { | 140 "5": { |
| 159 "top": 368 | 159 "top": 368 |
| 160 }, | 160 }, |
| 161 "post_job_actions": {}, | 161 "post_job_actions": {}, |
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| 163 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 163 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 164 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 164 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 165 "tool_version": "0.1", | 165 "tool_version": "0.1", |
| 166 "type": "tool", | 166 "type": "tool", |
| 167 "user_outputs": [] | 167 "user_outputs": [] |
| 168 }, | 168 }, |
| 169 "6": { | 169 "6": { |
| 188 "top": 251 | 188 "top": 251 |
| 189 }, | 189 }, |
| 190 "post_job_actions": {}, | 190 "post_job_actions": {}, |
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| 192 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 192 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 193 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 193 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 194 "tool_version": "0.1", | 194 "tool_version": "0.1", |
| 195 "type": "tool", | 195 "type": "tool", |
| 196 "user_outputs": [] | 196 "user_outputs": [] |
| 197 }, | 197 }, |
| 198 "7": { | 198 "7": { |
| 217 "top": 370 | 217 "top": 370 |
| 218 }, | 218 }, |
| 219 "post_job_actions": {}, | 219 "post_job_actions": {}, |
| 220 "tool_errors": null, | 220 "tool_errors": null, |
| 221 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 221 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 222 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 222 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 223 "tool_version": "0.1", | 223 "tool_version": "0.1", |
| 224 "type": "tool", | 224 "type": "tool", |
| 225 "user_outputs": [] | 225 "user_outputs": [] |
| 226 }, | 226 }, |
| 227 "8": { | 227 "8": { |
| 246 "top": 212 | 246 "top": 212 |
| 247 }, | 247 }, |
| 248 "post_job_actions": {}, | 248 "post_job_actions": {}, |
| 249 "tool_errors": null, | 249 "tool_errors": null, |
| 250 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 250 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 251 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 251 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 252 "tool_version": "0.1", | 252 "tool_version": "0.1", |
| 253 "type": "tool", | 253 "type": "tool", |
| 254 "user_outputs": [] | 254 "user_outputs": [] |
| 255 }, | 255 }, |
| 256 "9": { | 256 "9": { |
| 299 "top": 330 | 299 "top": 330 |
| 300 }, | 300 }, |
| 301 "post_job_actions": {}, | 301 "post_job_actions": {}, |
| 302 "tool_errors": null, | 302 "tool_errors": null, |
| 303 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_2-6/0.1", | 303 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_2-6/0.1", |
| 304 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"sleep_time\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"input_file1\": \"null\", \"input_file2\": \"null\"}", | 304 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"sleep_time\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"input_file1\": \"null\", \"input_file2\": \"null\"}", |
| 305 "tool_version": "0.1", | 305 "tool_version": "0.1", |
| 306 "type": "tool", | 306 "type": "tool", |
| 307 "user_outputs": [] | 307 "user_outputs": [] |
| 308 }, | 308 }, |
| 309 "10": { | 309 "10": { |
| 328 "top": 611 | 328 "top": 611 |
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| 330 "post_job_actions": {}, | 330 "post_job_actions": {}, |
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| 332 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 332 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 333 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 333 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 334 "tool_version": "0.1", | 334 "tool_version": "0.1", |
| 335 "type": "tool", | 335 "type": "tool", |
| 336 "user_outputs": [] | 336 "user_outputs": [] |
| 337 }, | 337 }, |
| 338 "11": { | 338 "11": { |
| 357 "top": 371 | 357 "top": 371 |
| 358 }, | 358 }, |
| 359 "post_job_actions": {}, | 359 "post_job_actions": {}, |
| 360 "tool_errors": null, | 360 "tool_errors": null, |
| 361 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 361 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 362 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 362 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 363 "tool_version": "0.1", | 363 "tool_version": "0.1", |
| 364 "type": "tool", | 364 "type": "tool", |
| 365 "user_outputs": [] | 365 "user_outputs": [] |
| 366 }, | 366 }, |
| 367 "12": { | 367 "12": { |
| 386 "top": 493 | 386 "top": 493 |
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| 388 "post_job_actions": {}, | 388 "post_job_actions": {}, |
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| 390 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 390 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 391 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 391 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 392 "tool_version": "0.1", | 392 "tool_version": "0.1", |
| 393 "type": "tool", | 393 "type": "tool", |
| 394 "user_outputs": [] | 394 "user_outputs": [] |
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| 396 "13": { | 396 "13": { |
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| 417 "post_job_actions": {}, | 417 "post_job_actions": {}, |
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| 419 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 419 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 420 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 420 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 421 "tool_version": "0.1", | 421 "tool_version": "0.1", |
| 422 "type": "tool", | 422 "type": "tool", |
| 423 "user_outputs": [] | 423 "user_outputs": [] |
| 424 }, | 424 }, |
| 425 "14": { | 425 "14": { |
| 444 "top": 496 | 444 "top": 496 |
| 445 }, | 445 }, |
| 446 "post_job_actions": {}, | 446 "post_job_actions": {}, |
| 447 "tool_errors": null, | 447 "tool_errors": null, |
| 448 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 448 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 449 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 449 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 450 "tool_version": "0.1", | 450 "tool_version": "0.1", |
| 451 "type": "tool", | 451 "type": "tool", |
| 452 "user_outputs": [] | 452 "user_outputs": [] |
| 453 }, | 453 }, |
| 454 "15": { | 454 "15": { |
| 473 "top": 377 | 473 "top": 377 |
| 474 }, | 474 }, |
| 475 "post_job_actions": {}, | 475 "post_job_actions": {}, |
| 476 "tool_errors": null, | 476 "tool_errors": null, |
| 477 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 477 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 478 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 478 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 479 "tool_version": "0.1", | 479 "tool_version": "0.1", |
| 480 "type": "tool", | 480 "type": "tool", |
| 481 "user_outputs": [] | 481 "user_outputs": [] |
| 482 }, | 482 }, |
| 483 "16": { | 483 "16": { |
| 502 "top": 499 | 502 "top": 499 |
| 503 }, | 503 }, |
| 504 "post_job_actions": {}, | 504 "post_job_actions": {}, |
| 505 "tool_errors": null, | 505 "tool_errors": null, |
| 506 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", | 506 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/hackdna/refinery_test/refinery_test_1-1/0.1", |
| 507 "tool_state": "{\"__page__\": 0, \"stdout\": \"\\\"False\\\"\", \"input_file\": \"null\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", | 507 "tool_state": "{\"__page__\": 0, \"input_file\": \"null\", \"stdout\": \"\\\"False\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"False\\\"\", \"stderr\": \"\\\"False\\\"\", \"sleep_time\": \"\\\"0\\\"\"}", |
| 508 "tool_version": "0.1", | 508 "tool_version": "0.1", |
| 509 "type": "tool", | 509 "type": "tool", |
| 510 "user_outputs": [] | 510 "user_outputs": [] |
| 511 } | 511 } |
| 512 } | 512 } |