Mercurial > repos > hackdna > pathprint
diff distance.xml @ 0:0cebe436a553 draft default tip
Initial upload.
| author | hackdna |
|---|---|
| date | Fri, 17 May 2013 14:29:33 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/distance.xml Fri May 17 14:29:33 2013 -0400 @@ -0,0 +1,44 @@ +<tool id="pathprint-distance" name="Find Distance to Pluripotent Signature"> + +<!-- +<description>Find Distance to Pluripotent Signature</description> +--> + + <command>distance.r $input $output $output2</command> + + <inputs> + <param name="input" type="data" label="Pathway Fingerprint" help="Submit a PathPrint Fingerprint file from your history to determine how similar your experiment is to pluripotent samples in GEO"/> + </inputs> + + <outputs> + <data format="tabular" name="output" label="Distance from pluripotent consensus"/> + <data format="pdf" name="output2" label="Histogram"/> + </outputs> + + <stdio> + <exit_code range="1:" level="fatal" /> + </stdio> + + <help> + +**What it does** + +This tool takes the computed PathPrint Fingerprint as input and uses it to determine how similar +your data are to a consensus signature generated from a set of pluripotent samples in GEO. + +----- + +**Input**: A PathPrint Fingerprint file from your history + +**Output**: + +1. Distance from pluripotent consensus: tab delimited file containing distance and p-value for each sample from the pluripotent consensus signature. + +2. Histogram: PDF file containing two histograms: (1) distribution of distances for ~180,000 GEO samples from the pluripotent signature; (2) distribution of distances for the input samples from the pluripotent signature. + +----- + +Feedback is welcome. Please send your questions, comments and suggestions to scde@hsci.harvard.edu. + </help> +</tool> +