Mercurial > repos > hackdna > pathprint
diff similar-experiments.xml @ 0:0cebe436a553 draft default tip
Initial upload.
| author | hackdna |
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| date | Fri, 17 May 2013 14:29:33 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/similar-experiments.xml Fri May 17 14:29:33 2013 -0400 @@ -0,0 +1,38 @@ +<tool id="pathprint-similar" name="Find Similar Experiments in GEO"> + +<!-- +<description>Find Similar Experiments in GEO</description> +--> + + <command>similar-experiments.r $input $output</command> + + <inputs> + <param name="input" type="data" label="Pathway Fingerprint" help="Submit a PathPrint Fingerprint from your history"/> + </inputs> + + <outputs> + <data format="html" name="output" label="Similar Experiments in GEO"/> + </outputs> + + <stdio> + <exit_code range="1:" level="fatal" /> + </stdio> + + <help> + +**What it does** + +This tool takes a PathPrint Fingerprint as input and identifies experiments in GEO that are most similar based on a Manhattan distance. + +----- + +**Input:** PathPrint Fingerprint file from your History + +**Output:** Html page showing the most similar GEO experiments, their distance and associated p-value. Entries are linked to GEO. + +----- + +Feedback is welcome. Please send your questions, comments and suggestions to scde@hsci.harvard.edu. + </help> +</tool> +