comparison similar-experiments.xml @ 0:0cebe436a553 draft default tip

Initial upload.

0:0cebe436a553

<tool id="pathprint-similar" name="Find Similar Experiments in GEO">

<!--
<description>Find Similar Experiments in GEO</description>
-->

  <command>similar-experiments.r $input $output</command>

  <inputs> 
    <param name="input" type="data" label="Pathway Fingerprint" help="Submit a PathPrint Fingerprint from your history"/> 
  </inputs>

  <outputs> 
    <data format="html" name="output" label="Similar Experiments in GEO"/> 
  </outputs>

  <stdio>
    <exit_code range="1:" level="fatal" />
  </stdio>

  <help> 

**What it does**

This tool takes a PathPrint Fingerprint as input and identifies experiments in GEO that are most similar based on a Manhattan distance. 

-----

**Input:** PathPrint Fingerprint file from your History

**Output:** Html page showing the most similar GEO experiments, their distance and associated p-value. Entries are linked to GEO.

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Feedback is welcome. Please send your questions, comments and suggestions to [e-mail].
  </help>
</tool>