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author hackdna
date Fri, 17 May 2013 14:29:33 -0400
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1 <tool id="pathprint-similar" name="Find Similar Experiments in GEO">
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2
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3 <!--
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4 <description>Find Similar Experiments in GEO</description>
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5 -->
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6
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7 <command>similar-experiments.r $input $output</command>
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8
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9 <inputs>
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10 <param name="input" type="data" label="Pathway Fingerprint" help="Submit a PathPrint Fingerprint from your history"/>
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11 </inputs>
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12
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13 <outputs>
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14 <data format="html" name="output" label="Similar Experiments in GEO"/>
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15 </outputs>
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16
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17 <stdio>
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18 <exit_code range="1:" level="fatal" />
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19 </stdio>
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20
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21 <help>
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22
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23 **What it does**
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24
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25 This tool takes a PathPrint Fingerprint as input and identifies experiments in GEO that are most similar based on a Manhattan distance.
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26
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27 -----
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28
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29 **Input:** PathPrint Fingerprint file from your History
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30
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31 **Output:** Html page showing the most similar GEO experiments, their distance and associated p-value. Entries are linked to GEO.
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32
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33 -----
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34
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35 Feedback is welcome. Please send your questions, comments and suggestions to scde@hsci.harvard.edu.
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36 </help>
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37 </tool>
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